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Rename progress folder #371

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mschwoer
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  • rename the .progress folder to quant
  • rename the input parameter custom-quant-dir to quant-dir

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@GeorgWa GeorgWa left a comment

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LGTM

@@ -380,7 +382,7 @@ def run(*args, **kwargs):
library_path=library_path,
fasta_path_list=fasta_path_list,
config=config,
custom_quant_dir=custom_quant_dir,
quant_path=quant_dir,
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can't we call both of them quant_dir for simplicity?

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"_path" is more correct and should be used throughout the code base (cf. also the # TODO rename all output_directory, output_folder => output_path, quant_dir->quant_path (except cli parameter))

imho it's fine to name the cli parameter quant-dir as this might be more familiar to users .. very early on this should be called quant_path then

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Makes sense to me

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