parse_parameters.py error to sterr, adding of -u -x to outer.sh

MannLabs · Nov 11, 2024 · 2053939 · 2053939
1 parent 5d98bc9
commit 2053939
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/misc/distributed_search/outer.sh b/misc/distributed_search/outer.sh
@@ -6,7 +6,7 @@
 
 # Set behavior when errors are encountered 
 # # TODO: unresolved issues with failing on error due to library generation steps expecting AlphaDIA to fail since there are no rawfiles.
-# set -e -u -x
+set -u -x
 
 # Default search parameters
 nnodes=1

diff --git a/misc/distributed_search/parse_parameters.py b/misc/distributed_search/parse_parameters.py
@@ -67,7 +67,7 @@
     if os.path.exists(args.library_path) and os.path.basename(args.library_path).endswith('.hdf'):
         lib_source = args.library_path
     else:
-        print("No valid library_path to a .hdf file provided and no valid library path to a .hdf file specified in config file, exiting...")
+        print("No valid library_path to a .hdf file provided and no valid library path to a .hdf file specified in config file, exiting...", file=sys.stderr)
         sys.exit(1)
 
     # copy library into chunk folder to avoid simultaneous reads of the same library