Merge pull request #366 from MannLabs/more_linting_I #550
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| on: | |
| pull_request: | |
| types: [ labeled ] | |
| push: | |
| branches: [ main, development ] | |
| workflow_dispatch: | |
| name: FDR performance test | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| fdr_performance_testing: | |
| if: contains(github.event.pull_request.labels.*.name, 'test:fdr') || github.event_name == 'push' || github.event_name == 'workflow_dispatch' | |
| name: FDR performance testing | |
| runs-on: AlphaDIA | |
| env: # Or as an environment variable | |
| NEPTUNE_API_TOKEN: ${{ secrets.NEPTUNE_FDR_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.11 | |
| - name: Extract branch name | |
| shell: bash | |
| run: echo "branch=${GITHUB_HEAD_REF:-${GITHUB_REF#refs/heads/}}" >> $GITHUB_OUTPUT | |
| id: extract_branch | |
| - name: Conda info | |
| shell: bash -l {0} | |
| run: conda info | |
| - name: Pip installation with all loose dependencies | |
| shell: bash -l {0} | |
| run: | | |
| cd misc | |
| . ./pip_install.sh stable,test | |
| - name: Run legacy classifier | |
| env: # Or as an environment variable | |
| NEPTUNE_API_TOKEN: ${{ secrets.NEPTUNE_FDR_TOKEN }} | |
| shell: bash -l {0} | |
| run: | | |
| conda activate alphadia | |
| python tests/performance_tests/fdr_test.py \ | |
| --classifier legacy_new_batching \ | |
| --threads 4 \ | |
| --neptune-tag github-action \ | |
| --neptune-tag "branch:${{ steps.extract_branch.outputs.branch }}" | |
| - name: Run binary classifier | |
| env: # Or as an environment variable | |
| NEPTUNE_API_TOKEN: ${{ secrets.NEPTUNE_FDR_TOKEN }} | |
| shell: bash -l {0} | |
| run: | | |
| conda activate alphadia | |
| python tests/performance_tests/fdr_test.py \ | |
| --classifier binary \ | |
| --threads 4 \ | |
| --neptune-tag github-action \ | |
| --neptune-tag "branch:${{ steps.extract_branch.outputs.branch }}" |