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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 6.1k 1.8k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.1k 223

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 221 20

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 233 75

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 142 38

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 560 102

Repositories

Showing 10 of 73 repositories
  • batchgeneratorsv2 Public
    MIC-DKFZ/batchgeneratorsv2’s past year of commit activity
    Python 16 Apache-2.0 7 0 2 Updated Dec 22, 2024
  • Foreground-and-Anonymization-Area-Segmentation Public
    MIC-DKFZ/Foreground-and-Anonymization-Area-Segmentation’s past year of commit activity
    0 0 0 0 Updated Dec 18, 2024
  • HD-BET Public

    MRI brain extraction tool

    MIC-DKFZ/HD-BET’s past year of commit activity
    Python 297 Apache-2.0 66 24 7 Updated Dec 18, 2024
  • predictive_image_biomarker_analysis Public

    Code for the paper "Enhancing predictive imaging biomarker discovery through treatment effect analysis", which can be used for training and evaluating CATE estimation models for identifying predictive imaging biomarkers from pre-treatment images.

    MIC-DKFZ/predictive_image_biomarker_analysis’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Dec 10, 2024
  • segmentation_failures_benchmark Public
    MIC-DKFZ/segmentation_failures_benchmark’s past year of commit activity
    Python 5 Apache-2.0 0 0 0 Updated Dec 10, 2024
  • ADetect Public

    "Automated detection of aortic dissections (AD) from CT scans using deep segmentation and optimized thresholding. Applicable in emergency clinical settings, for research purposes only."

    MIC-DKFZ/ADetect’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Dec 9, 2024
  • MultiTalent Public

    Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"

    MIC-DKFZ/MultiTalent’s past year of commit activity
    Python 50 Apache-2.0 3 0 0 Updated Dec 3, 2024
  • nnUNet Public
    MIC-DKFZ/nnUNet’s past year of commit activity
    Python 6,099 Apache-2.0 1,799 235 (1 issue needs help) 17 Updated Dec 3, 2024
  • iScience_GlioLymph_classification Public
    MIC-DKFZ/iScience_GlioLymph_classification’s past year of commit activity
    Python 0 0 0 0 Updated Nov 30, 2024
  • MedSAMCodingPowerUnit Public
    MIC-DKFZ/MedSAMCodingPowerUnit’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 26, 2024
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