Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

BAMF MR Brain tumor segmentation #93

Open
wants to merge 28 commits into
base: main
Choose a base branch
from
Open
Changes from 1 commit
Commits
Show all changes
28 commits
Select commit Hold shift + click to select a range
6146429
MR Brain tumor segmentation
jithenece Jul 9, 2024
22636ff
add custom segdb entries
jithenece Jul 11, 2024
afcda3e
use gcc11.4 in synch to training code base
jithenece Jul 20, 2024
029fa7f
remove files
jithenece Jul 24, 2024
0bdc69f
change working dir
jithenece Jul 24, 2024
03679eb
add meta
jithenece Jul 30, 2024
2acda92
set order
jithenece Jul 30, 2024
c1b29fd
fix dockerfile
jithenece Jul 31, 2024
f11aeb0
MHub compliance rule fixes
jithenece Jul 31, 2024
75050b2
MHub compliance rule fixes
jithenece Jul 31, 2024
b927a85
Dockerfile replace copy with build
jithenece Aug 1, 2024
f158a7d
separate single processor into multiple modules
jithenece Aug 7, 2024
43a08df
format label name and value
jithenece Aug 7, 2024
ef4621f
fix review comments
jithenece Aug 21, 2024
be2e7a0
fix review comment
jithenece Aug 22, 2024
d382e5f
remove custom seg entries
jithenece Aug 23, 2024
1126c9d
fix code comments
jithenece Aug 23, 2024
57b1f56
fix meta comments
jithenece Aug 23, 2024
16196f7
add limitations
jithenece Aug 23, 2024
49bdb90
fix workflow
jithenece Aug 23, 2024
044d076
fix meta
jithenece Aug 23, 2024
5be31ea
update model name
jithenece Aug 26, 2024
996d543
update process flag
jithenece Aug 27, 2024
628022d
Merge branch 'MHubAI:main' into bamf_mr_brain_tumor
jithenece Aug 27, 2024
f40185f
Merge branch 'MHubAI:main' into bamf_mr_brain_tumor
jithenece Sep 9, 2024
8a4967d
Merge branch 'MHubAI:main' into bamf_mr_brain_tumor
jithenece Oct 1, 2024
489d518
update python dependencies
jithenece Oct 2, 2024
224131a
/test validation
jithenece Oct 2, 2024
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Prev Previous commit
Next Next commit
update model name
  • Loading branch information
jithenece committed Aug 26, 2024
commit 5be31ea6e1d792f2d9220212e19e642b50460e71
2 changes: 1 addition & 1 deletion models/bamf_mr_brain_tumor/config/default.yml
Original file line number Diff line number Diff line change
@@ -76,7 +76,7 @@ modules:
in_registration_datas: nifti:mod=mr:task=bias_corrected

DsegConverter:
model_name: Bamf NNUnet Brain segmentation
model_name: BAMF Brain Tumor AI Segmentation
skip_empty_slices: True

DataOrganizer:
Loading