Import 'stats' used for 'prcomp'

LieberInstitute · Nov 2, 2023 · b4ab53b · b4ab53b
1 parent 9ea00f6
commit b4ab53b
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Showing 4 changed files with 5 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -27,4 +27,5 @@ Imports:
     SpatialExperiment,
     SummarizedExperiment,
     Matrix,
-    MatrixGenerics
+    MatrixGenerics,
+    stats
diff --git a/NAMESPACE b/NAMESPACE
@@ -10,4 +10,5 @@ import(SpatialExperiment)
 import(SummarizedExperiment)
 import(ggplot2)
 import(spatialLIBD)
+import(stats)
 import(viridisLite)
diff --git a/R/multi_gene.R b/R/multi_gene.R
@@ -138,7 +138,7 @@ spot_plot_sparsity <- function(spe, genes, sample_id, assayname = "counts", minC
 #'
 #' @export
 #' @author Nicholas J. Eagles
-#' @import SpatialExperiment SummarizedExperiment Matrix
+#' @import SpatialExperiment SummarizedExperiment stats
 #' @family Spot plots summarizing expression of multiple genes simultaneously
 #'
 #' @examples

diff --git a/tests/testthat/test-multi_gene.R b/tests/testthat/test-multi_gene.R
@@ -34,7 +34,7 @@ test_plot_fun <- function(spe, plot_fun) {
         "internally handled and may not be specified"
     )
     expect_error(
-        plot_fun(spe, genes, sample_id, var_name = 'sample_id'),
+        plot_fun(spe, genes, sample_id, var_name = "sample_id"),
         "internally handled and may not be specified"
     )