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lcolladotor committed Jul 26, 2024
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1 change: 1 addition & 0 deletions README.Rmd
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# visiumStitched <img src="man/figures/logo.png" align="right" />

<!-- badges: start -->
[![DOI](https://zenodo.org/badge/709323164.svg)](https://zenodo.org/doi/10.5281/zenodo.13012339)
[![GitHub issues](https://img.shields.io/github/issues/LieberInstitute/visiumStitched)](https://github.com/LieberInstitute/visiumStitched/issues)
[![GitHub pulls](https://img.shields.io/github/issues-pr/LieberInstitute/visiumStitched)](https://github.com/LieberInstitute/visiumStitched/pulls)
[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html#stable)
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3 changes: 2 additions & 1 deletion README.md
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<!-- badges: start -->

[![DOI](https://zenodo.org/badge/709323164.svg)](https://zenodo.org/doi/10.5281/zenodo.13012339)
[![GitHub
issues](https://img.shields.io/github/issues/LieberInstitute/visiumStitched)](https://github.com/LieberInstitute/visiumStitched/issues)
[![GitHub
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## Download the spot-level data, which is a SpatialExperiment object
spe <- spatialLIBD::fetch_data(type = "visiumStitched_brain_spe")
#> 2024-07-26 17:05:30.544877 loading file /Users/leocollado/Library/Caches/org.R-project.R/R/BiocFileCache/154352e7328f0_visiumStitched_brain_spe.rds%3Frlkey%3Dnq6a82u23xuu9hohr86oodwdi%26dl%3D1
#> 2024-07-26 18:36:29.721855 loading file /Users/leocollado/Library/Caches/org.R-project.R/R/BiocFileCache/154352e7328f0_visiumStitched_brain_spe.rds%3Frlkey%3Dnq6a82u23xuu9hohr86oodwdi%26dl%3D1

## Explore the stitched data
spe
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