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Add full description of required columns for 'sample_info'
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Nick-Eagles committed Jul 24, 2024
1 parent 8ba9048 commit 1163744
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions R/add_array_coords.R
Original file line number Diff line number Diff line change
Expand Up @@ -16,8 +16,10 @@
#' process each group as if it really were one capture area in the first place.
#'
#' @param spe A \code{SpatialExperiment}
#' @param sample_info A \code{tibble} with columns \code{capture_area} and
#' \code{group}
#' @param sample_info A \code{tibble} with columns \code{capture_area},
#' \code{group}, \code{fiji_xml_path}, \code{fiji_image_path},
#' \code{spaceranger_dir}, \code{intra_group_scalar}, and
#' \code{group_hires_scalef}
#' @param coords_dir A \code{character(1)} vector giving the directory
#' containing sample directories each with \code{tissue_positions.csv},
#' \code{scalefactors_json.json}, and \code{tissue_lowres_image.png} files
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