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stubborn ci/cd warning
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gpertea committed Sep 22, 2024
1 parent 9e328f7 commit c700acb
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Showing 2 changed files with 13 additions and 6 deletions.
1 change: 0 additions & 1 deletion .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -11,4 +11,3 @@
^\.Rdata$
^\.httr-oauth$
^\.DS_Store$
^dcs04_data$
18 changes: 13 additions & 5 deletions .github/workflows/check-bioc.yml
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ env:
run_covr: 'true'
run_pkgdown: 'true'
has_RUnit: 'false'
cache-version: 'cache-v1'
cache-version: 'cache-v3'
run_docker: 'false'

jobs:
Expand Down Expand Up @@ -194,13 +194,13 @@ jobs:
shell: Rscript {0}

- name: Install covr
if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
if: env.run_covr == 'true' && runner.os == 'Linux'
run: |
remotes::install_cran("covr")
shell: Rscript {0}

- name: Install pkgdown
if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
if: env.run_pkgdown == 'true' && runner.os == 'Linux'
run: |
remotes::install_cran("pkgdown")
shell: Rscript {0}
Expand Down Expand Up @@ -250,13 +250,21 @@ jobs:
shell: Rscript {0}

- name: Test coverage
if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
if: env.run_covr == 'true' && runner.os == 'Linux'
run: |
covr::codecov()
shell: Rscript {0}

- name: List R and man directories
if: github.ref == 'refs/heads/gdev' && runner.os == 'Linux'
run: |
echo "R directory:"
ls -l R/
echo "man directory:"
ls -l man/
- name: Install package
if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
if: env.run_pkgdown == 'true' && runner.os == 'Linux'
run: R CMD INSTALL .

- name: Build pkgdown site
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