Skip to content

Issues: Kuanhao-Chao/LiftOn

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

16 Open 8 Closed
16 Open 8 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

gffutils database build failed with No lines parsed
#25 opened Sep 11, 2024 by yyliang12
1
LiftOff generates better BUSCO scores than LiftOn enhancement New feature or request fixed
#24 opened Aug 20, 2024 by 14zac2
@Kuanhao-Chao
2
Reference annotation database construction get's stuck
#23 opened Aug 13, 2024 by wrengs
LiftOn silently failing due to ID feature
#22 opened Aug 9, 2024 by Glfrey
@Kuanhao-Chao
Python errors when running lifton
#21 opened Aug 5, 2024 by zgb963
3
Installation with pip fails, requiring networkx>=3.3
#19 opened Jul 30, 2024 by 14zac2
@Kuanhao-Chao
can not creating DNA dictionary/protein dictionary from the reference annotation and error in miniprot
#18 opened Jul 26, 2024 by ikkaku1005
@Kuanhao-Chao
1
can not find the installed miniprot installation
#17 opened Jul 23, 2024 by ikkaku1005
@Kuanhao-Chao
1
Provided CHM13 file has incorrect exons bug Something isn't working
#16 opened Jul 18, 2024 by antnguye
@Kuanhao-Chao
race conditions bug Something isn't working feature_request
#14 opened Jul 9, 2024 by kdm9
@Kuanhao-Chao
3
gffutils database build failed with UNIQUE constraint failed: features.id
#12 opened Jul 2, 2024 by yeeus
@Kuanhao-Chao
lifton installation error [pip] bug Something isn't working dependency error
#11 opened Jun 12, 2024 by haydenji0731
@Kuanhao-Chao
parasail_memalign: posix_memalign failed: Cannot allocate memory bug Something isn't working
#9 opened May 30, 2024 by celinehohzm
@Kuanhao-Chao
Weird formatting of column 9 in gff3 lift-over bug Something isn't working feature_request
#8 opened May 30, 2024 by TDDB-limagrain
@Kuanhao-Chao
gffutils error at stage "Populating features" bug Something isn't working
#7 opened May 30, 2024 by jolbi
@Kuanhao-Chao
2
There are no available installation conda packages conda-package
#6 opened May 28, 2024 by hongman2006
@Kuanhao-Chao
5
ProTip! Updated in the last three days: updated:>2024-10-20.