We have provided the resources necceasary to generate the figures from ``Locality sensitive hashing for the edit distance'' by Guillaume Marçais, Dan DeBlasio, Prashant Pandey, and Carl Kingsford. Which is to appear inthe proceedings of ISMB/ECCB 2019.
The two main directories contain the necceasry code to produce the phylogeny figures (is_trees
) and the random sequences figure (random_sequences
).
All of the figure generation is performed in a combination of perl
and python
.
The omh_compute
directory contains the code neccesary for the figure generation and is written in c++
.
This directory needs to be compiled before anything can be run in the other two.