ngseasy-release-0.0.1

ngseasy-release-0.0.1

• F1000 Research release
• Dockered Tool Version: 1.0-r001
• release: dirty_tango
• basic functionality :
  -- fastqc
  -- trimmomatic
  -- all aligners : bwa,bowtie2,snap,stampy,novoalign
  -- var calling with freebayes or platypus
• indel realignment and BSQR : work in progress
• CNV Calling : work in progress
• Reports : work in progress

pre-release-0.0.2

pre-release-0.0.2

• F1000 Research
• trimmomatic fix
• fastqc > trimmomatic > all alignes) > var calling with freebayes or platypus : tested
• indel realignment and BSQR : work in progress
• CNV Calling : work in progress
• Reports : work in progress

pre-release-0.0.1

pre-release-0.0.1

minor bug fixes

• Trimmomatic: path fix to contaminant_list.fa
• fastqc > trimmomatic > aligner > var calling with freebayes or platypus : tested
• indel realignment and BSQR : work in progress

pre-release-0.0.0

buggy, but works, double check your config files, basic functionality for fastq > bam > vcf