MSA viz using Nightingale

frontend/.env

@@ -1,5 +1,5 @@
-VITE_TITLE=MolEvolvR
-VITE_DESCRIPTION=A web app characterizing proteins using molecular evolution and phylogeny
-VITE_URL=https://molevolvr.org
-VITE_API=https://api.molevolvr.org
-
+VITE_TITLE=MolEvolvR
+VITE_DESCRIPTION=A web app characterizing proteins using molecular evolution and phylogeny
+VITE_URL=https://molevolvr.org
+VITE_API=https://api.molevolvr.org
+

frontend/.gitignore

@@ -1,31 +1,31 @@
-# Logs
-logs
-*.log
-npm-debug.log*
-yarn-debug.log*
-yarn-error.log*
-pnpm-debug.log*
-lerna-debug.log*
-
-node_modules
-dist
-dist-ssr
-*.local
-
-# Editor directories and files
-.vscode/*
-!.vscode/extensions.json
-!.vscode/settings.json
-.idea
-.DS_Store
-*.suo
-*.ntvs*
-*.njsproj
-*.sln
-*.sw?
-
-/test-results/
-/playwright-report/
-/blob-report/
-/playwright/.cache/
-tsconfig.tsbuildinfo
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+pnpm-debug.log*
+lerna-debug.log*
+
+node_modules
+dist
+dist-ssr
+*.local
+
+# Editor directories and files
+.vscode/*
+!.vscode/extensions.json
+!.vscode/settings.json
+.idea
+.DS_Store
+*.suo
+*.ntvs*
+*.njsproj
+*.sln
+*.sw?
+
+/test-results/
+/playwright-report/
+/blob-report/
+/playwright/.cache/
+tsconfig.tsbuildinfo

frontend/.prettierignore

@@ -1,2 +1,2 @@
-dist
-mockServiceWorker.js
+dist
+mockServiceWorker.js

frontend/.prettierrc

@@ -1,20 +1,20 @@
-{
-  "plugins": [
-    "@ianvs/prettier-plugin-sort-imports",
-    "./node_modules/prettier-plugin-jsdoc/dist/index.js",
-    "prettier-plugin-css-order"
-  ],
-  "importOrder": [
-    "^react",
-    "^[a-zA-Z]",
-    "^@[a-zA-Z]",
-    "^@/",
-    "^/",
-    "^./",
-    "^../"
-  ],
-  "importOrderParserPlugins": ["typescript", "jsx", "importAssertions"],
-  "cssDeclarationSorterOrder": "smacss",
-  "jsdocCapitalizeDescription": false,
-  "htmlWhitespaceSensitivity": "strict"
-}
+{
+  "plugins": [
+    "@ianvs/prettier-plugin-sort-imports",
+    "./node_modules/prettier-plugin-jsdoc/dist/index.js",
+    "prettier-plugin-css-order"
+  ],
+  "importOrder": [
+    "^react",
+    "^[a-zA-Z]",
+    "^@[a-zA-Z]",
+    "^@/",
+    "^/",
+    "^./",
+    "^../"
+  ],
+  "importOrderParserPlugins": ["typescript", "jsx", "importAssertions"],
+  "cssDeclarationSorterOrder": "smacss",
+  "jsdocCapitalizeDescription": false,
+  "htmlWhitespaceSensitivity": "strict"
+}

frontend/Dockerfile

@@ -1,50 +1,50 @@
-# from https://bun.sh/guides/ecosystem/docker, with modifications
-# to run a hot-reloading development server
-
-# use the official Bun image
-# see all versions at https://hub.docker.com/r/oven/bun/tags
-FROM oven/bun:1 AS base
-WORKDIR /app
-
-
-# -----------------------------------------------------------
-# install dependencies for dev and prod into temp directories
-FROM base AS install
-
-COPY package.json bun.lockb /temp/dev/
-RUN cd /temp/dev/ && \
-    bun install --frozen-lockfile
-
-# FA: the production-only install is currently commented out since we always
-# require the dev dependencies, specifically vite, to run *or* build the app.
-# i'm leaving it here because perhaps someday we'll think of a reason why we
-# want just the production dependencies.
-
-# # install with --production (exclude devDependencies)
-# COPY package.json bun.lockb /temp/prod/
-# RUN cd /temp/prod && \
-#     bun install --frozen-lockfile --production
-
-# -----------------------------------------------------------
-# copy node_modules from dev stage, copy entire app
-# source into the image
-FROM base AS dev
-COPY --from=install /temp/dev/node_modules node_modules
-COPY . .
-# run the app in hot-reloading development mode
-# set up vite to accept connections on any interface, e.g. from outside the
-# container, and to always run on port 5173)
-CMD [ "vite", "--host", "--port", "5173" ]
-
-
-# -----------------------------------------------------------
-# copy production dependencies and source code into final image
-FROM base AS release
-COPY --from=install /temp/dev/node_modules node_modules
-COPY . .
-
-# produce a bundle that'll then be served via a reverse http proxy, e.g. nginx
-# (you'll want /app/dist to be mapped to a volume that's served by the reverse
-# http proxy)
-CMD [ "vite", "build" ]
+# from https://bun.sh/guides/ecosystem/docker, with modifications
+# to run a hot-reloading development server
+
+# use the official Bun image
+# see all versions at https://hub.docker.com/r/oven/bun/tags
+FROM oven/bun:1 AS base
+WORKDIR /app
+
+
+# -----------------------------------------------------------
+# install dependencies for dev and prod into temp directories
+FROM base AS install
+
+COPY package.json bun.lockb /temp/dev/
+RUN cd /temp/dev/ && \
+    bun install --frozen-lockfile
+
+# FA: the production-only install is currently commented out since we always
+# require the dev dependencies, specifically vite, to run *or* build the app.
+# i'm leaving it here because perhaps someday we'll think of a reason why we
+# want just the production dependencies.
+
+# # install with --production (exclude devDependencies)
+# COPY package.json bun.lockb /temp/prod/
+# RUN cd /temp/prod && \
+#     bun install --frozen-lockfile --production
+
+# -----------------------------------------------------------
+# copy node_modules from dev stage, copy entire app
+# source into the image
+FROM base AS dev
+COPY --from=install /temp/dev/node_modules node_modules
+COPY . .
+# run the app in hot-reloading development mode
+# set up vite to accept connections on any interface, e.g. from outside the
+# container, and to always run on port 5173)
+CMD [ "vite", "--host", "--port", "5173" ]
+
+
+# -----------------------------------------------------------
+# copy production dependencies and source code into final image
+FROM base AS release
+COPY --from=install /temp/dev/node_modules node_modules
+COPY . .
+
+# produce a bundle that'll then be served via a reverse http proxy, e.g. nginx
+# (you'll want /app/dist to be mapped to a volume that's served by the reverse
+# http proxy)
+CMD [ "vite", "build" ]