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version bump

version bump #95

Workflow file for this run

name: CI
on: push
jobs:
test-fast:
runs-on: macos-latest
strategy:
matrix:
python-version: ["3.9", "3.10"]
steps:
- uses: actions/checkout@master
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@master
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
pip install -r requirements.txt
# make CLI available for tests
make install
# install deps for tests
pip install pytest
pip install pytest-cov
pip install mock
- name: Install HMMER
run: |
brew install hmmer
- name: Run tests
run: |
make test.fast
test-full:
runs-on: macos-latest
env:
PYTHON: "3.10"
steps:
- uses: actions/checkout@master
- name: Setup Python
uses: actions/setup-python@master
with:
python-version: "3.10"
- name: Install dependencies
run: |
pip install -r requirements.txt
# make CLI available for tests
make install
# install test dependencies
pip install pytest
pip install pytest-cov
pip install mock
- name: Install HMMER
run: |
brew install hmmer
- name: Generate coverage report
run: |
make test.coverage
- name: Upload unit test coverage to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./unit.coverage.xml
flags: unit
env_vars: PYTHON
name: codecov-unit
fail_ci_if_error: false
- name: Upload integration test coverage to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
file: ./integration.coverage.xml
flags: integration
env_vars: PYTHON
name: codecov-integration
fail_ci_if_error: false
docs:
runs-on: macos-latest
steps:
- name: Checkout
uses: actions/checkout@master
with:
persist-credentials: false
- name: Setup Python
uses: actions/setup-python@master
with:
python-version: 3.7
- name: Install pipenv
uses: dschep/install-pipenv-action@v1
- name: Build docs
run: |
cd docs
pipenv install
pipenv run make html
cd ..
- name: Deploy
uses: JamesIves/github-pages-deploy-action@releases/v3
with:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
BRANCH: gh-pages
FOLDER: docs/_build/html