Bump certifi from 2020.12.5 to 2023.7.22 in /docs #91
Workflow file for this run
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name: CI | |
on: push | |
jobs: | |
test-fast: | |
runs-on: macos-latest | |
strategy: | |
matrix: | |
python-version: [3.6, 3.7, 3.8] | |
steps: | |
- uses: actions/checkout@master | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@master | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
pip install -r requirements.txt | |
# make CLI available for tests | |
make install | |
# install deps for tests | |
pip install pytest | |
pip install pytest-cov | |
pip install mock | |
- name: Install HMMER | |
run: | | |
brew install hmmer | |
- name: Run tests | |
run: | | |
make test.fast | |
test-full: | |
runs-on: macos-latest | |
env: | |
PYTHON: '3.9' | |
steps: | |
- uses: actions/checkout@master | |
- name: Setup Python | |
uses: actions/setup-python@master | |
with: | |
python-version: 3.9 | |
- name: Install dependencies | |
run: | | |
pip install -r requirements.txt | |
# make CLI available for tests | |
make install | |
# install test dependencies | |
pip install pytest | |
pip install pytest-cov | |
pip install mock | |
- name: Install HMMER | |
run: | | |
brew install hmmer | |
- name: Generate coverage report | |
run: | | |
make test.coverage | |
- name: Upload unit test coverage to Codecov | |
uses: codecov/[email protected] | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: ./unit.coverage.xml | |
flags: unit | |
env_vars: PYTHON | |
name: codecov-unit | |
fail_ci_if_error: false | |
- name: Upload integration test coverage to Codecov | |
uses: codecov/[email protected] | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: ./integration.coverage.xml | |
flags: integration | |
env_vars: PYTHON | |
name: codecov-integration | |
fail_ci_if_error: false | |
docs: | |
runs-on: macos-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@master | |
with: | |
persist-credentials: false | |
- name: Setup Python | |
uses: actions/setup-python@master | |
with: | |
python-version: 3.7 | |
- name: Install pipenv | |
uses: dschep/install-pipenv-action@v1 | |
- name: Build docs | |
run: | | |
cd docs | |
pipenv install | |
pipenv run make html | |
cd .. | |
- name: Deploy | |
uses: JamesIves/github-pages-deploy-action@releases/v3 | |
with: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
BRANCH: gh-pages | |
FOLDER: docs/_build/html |