Merge pull request #876 from I2PC/dmt_maxshift_tolerance

Max shift protocol: tolerate movies without micrographs associated
I2PC · Jan 20, 2025 · d2b0f31 · d2b0f31
2 parents 2cc7272 + ee1eea3
commit d2b0f31
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/xmipp3/protocols/protocol_movie_max_shift.py b/xmipp3/protocols/protocol_movie_max_shift.py
@@ -327,12 +327,16 @@ def tryToAppend(outSet, micOut):
 
             inputMovies = self._loadInputSet(self.movsFn)
             inputMics = self._loadMicAssociatedInputSet()
+            inputMicsIds = inputMics.getIdSet()
 
             for movieId in newDoneList:
                 movie = inputMovies.getItem("id", movieId).clone()
-                mic = inputMics.getItem("id", movieId).clone()
                 tryToAppend(movieSet, movie)
-                tryToAppend(micsSet, mic)
+                if movieId in inputMicsIds:
+                    mic = inputMics.getItem("id", movieId).clone()
+                    tryToAppend(micsSet, mic)
+                else:
+                    self.info("Movie with id %d has not a micrograph associated" %movieId)
 
             if movieSet.getSize() > 0:
                 self._updateOutputSet(OUTPUT_MOVIES + suffix, movieSet,