v0.11.0

• Add "v6" subscription queries for SmartSeq2 and 10x data
• Include the fields in notification metadata attachments as workflow labels
• Set max_cromwell_retries in workflow inputs (defaults to 0)
• Support HMAC auth for notifications
• Fix url for registering service account in FireCloud.
• Move dss_url, ingest_url and Cromwell-as-a-Service params into Lira config for greater flexibility.
• Hard code kube cluster name to "listener" in lira-deploy Jenkins job to prevent error when multiple clusters are present.
• Require both user and password when not using Cromwell-as-a-Service
• Improve instructions for updating a certificate

v0.10.0

• Improves the scalability and stability of Lira by:
  • Increasing the number of Gunicorn workers.
  • Increasing the timeout and graceful timeout of Gunicorn workers.
  • Replacing the sync workers with gevent workers.
• Adds the option to include additional metadata in notifications to the utility script when it is making subscriptions.
• Enables Lira to on hold workflows when it is submitting to Cromwell.

v0.9.1

Update kube-deploy script to pass in USE_CAAS parameter when creating the listener-deployment.yaml file.

v0.9.0

Add version endpoint to Lira that includes information about its configuration (e.g. what pipeline versions it is running)

v0.8.0

• Add cromwell-as-a-service support to lira
• Freeze libraries in requirements.txt

v0.7.0

• Label Feature
  Lira now could add labels to workflows at start time.
• Minor Fix
  Update thse config ctmpl file to fix the Green Box Integration Test.

v0.6.2

• Dynamically add environment-specific urls for the HCA data storage service and integration service into the lira config
• Make it possible to use a stub submission wdl

v0.6.1

Changes:

• Fix a bug with cache pool that can possibly break the inputs to Cromwell.

• Add Elasticsearch queries for both 10x v2 and SmartSeq2 pipelines which support v5 DCP metadata schema.

v0.6.0

Changes:

• Cromwell-as-a-Service support
  There are new scripts in the repo which help set up the required user accounts for lira to talk to Cromwell-as-a-Service:

• Logging
  Lira now can send logs to the HCA DCP's centralized logging system. There are also some bug fixes to Lira's logging mechanism.

v0.5.0

Changes:

• Python 3 support
  Lira now works in Python 3 as well as Python 2. Previously it worked in Python 2 only.
• WDL caching
  Lira now caches WDLs instead of downloading them anew for every workflow launch. Caching only works in Python 3. In Python 2 it still downloads the WDLs prior to each workflow launch. Caching is enabled by default but can be turned off by adding "cache_wdls": false to Lira's config.
• Dry run mode
  For testing purposes, Lira can now run in "dry run" mode, by adding dry_run: true to Lira's config. In this mode, Lira prepares submissions to Cromwell upon receiving notifications but does not actually send the workflows to Cromwell.
• Config field renamed
  wdl_default_inputs_link has been renamed wdl_static_inputs_link. Existing configurations must be modified to use the new field name or will cause an error on startup.