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update definition to cover more use cases, e.g. protein groups in Max…
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…Quant, which can subsume multiple MS runs per group.
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cbielow committed Mar 19, 2024
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3 changes: 1 addition & 2 deletions psi-ms.obo
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Expand Up @@ -24062,11 +24062,10 @@ synonym: "MS2-PrecZ-more" RELATED [PMID:24494671]
[Term]
id: MS:4000177
name: protein contaminant intensity ratio
def: "The fraction of total protein abundance in a mass spectrometry run which can be attributed to a user-defined list of contaminant proteins (e.g. using the cRAP contaminant database)." [PSI:MS]
def: "The fraction of total protein abundance in a mass spectrometry run or a group of runs which can be attributed to a user-defined list of contaminant proteins (e.g. using the cRAP contaminant database)." [PSI:MS]
comment: "High values may indicate a sample handling issue, and/or insufficient sample concentration."
is_a: MS:4000003 ! single value
relationship: has_metric_category MS:4000008 ! ID based metric
relationship: has_metric_category MS:4000012 ! single run based metric
relationship: has_value_type xsd:float ! The allowed value-type for this CV
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive
relationship: has_order MS:1002109 ! lower score better
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