chore(deps-dev): bump prettier from 2.8.4 to 3.3.3

.all-contributorsrc

@@ -3,9 +3,7 @@
   "projectOwner": "cevo-public",
   "repoType": "github",
   "repoHost": "https://github.com",
-  "files": [
-    "README.md"
-  ],
+  "files": ["README.md"],
   "imageSize": 100,
   "commit": true,
   "commitConvention": "none",
@@ -15,184 +13,133 @@
       "name": "Chaoran Chen",
       "avatar_url": "https://avatars.githubusercontent.com/u/18666552?v=4",
       "profile": "https://github.com/chaoran-chen",
-      "contributions": [
-        "code",
-        "data",
-        "ideas",
-        "maintenance",
-        "platform",
-        "research",
-        "infra"
-      ]
+      "contributions": ["code", "data", "ideas", "maintenance", "platform", "research", "infra"]
     },
     {
       "login": "tanja819",
       "name": "tanja819",
       "avatar_url": "https://avatars.githubusercontent.com/u/8371380?v=4",
       "profile": "https://github.com/tanja819",
-      "contributions": [
-        "ideas"
-      ]
+      "contributions": ["ideas"]
     },
     {
       "login": "SarahNadeau",
       "name": "Sarah Nadeau",
       "avatar_url": "https://avatars.githubusercontent.com/u/30396464?v=4",
       "profile": "https://github.com/SarahNadeau",
-      "contributions": [
-        "ideas",
-        "data",
-        "code"
-      ]
+      "contributions": ["ideas", "data", "code"]
     },
     {
       "login": "TKGZ",
       "name": "Michael Yared",
       "avatar_url": "https://avatars.githubusercontent.com/u/36269621?v=4",
       "profile": "https://github.com/TKGZ",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "tehwalris",
       "name": "Philippe Voinov",
       "avatar_url": "https://avatars.githubusercontent.com/u/1489115?v=4",
       "profile": "https://walr.is/",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "ningxie1991",
       "name": "ningxie",
       "avatar_url": "https://avatars.githubusercontent.com/u/3387698?v=4",
       "profile": "https://github.com/ningxie1991",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "corneliusroemer",
       "name": "Cornelius Roemer",
       "avatar_url": "https://avatars.githubusercontent.com/u/25161793?v=4",
       "profile": "https://github.com/corneliusroemer",
-      "contributions": [
-        "ideas"
-      ]
+      "contributions": ["ideas"]
     },
     {
       "login": "DrYak",
       "name": "DrYak",
       "avatar_url": "https://avatars.githubusercontent.com/u/11413679?v=4",
       "profile": "https://github.com/DrYak",
-      "contributions": [
-        "data"
-      ]
+      "contributions": ["data"]
     },
     {
       "login": "gautier-collab",
       "name": "gautier-collab",
       "avatar_url": "https://avatars.githubusercontent.com/u/55604970?v=4",
       "profile": "https://github.com/gautier-collab",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "dameyerdave",
       "name": "David Meyer",
       "avatar_url": "https://avatars.githubusercontent.com/u/5663605?v=4",
       "profile": "https://github.com/dameyerdave",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "anastasia-escher",
       "name": "Anastasia Escher",
       "avatar_url": "https://avatars.githubusercontent.com/u/52914023?v=4",
       "profile": "https://github.com/anastasia-escher",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "theosanderson",
       "name": "Theo Sanderson",
       "avatar_url": "https://avatars.githubusercontent.com/u/19732295?v=4",
       "profile": "http://theo.io/",
-      "contributions": [
-        "code",
-        "ideas"
-      ]
+      "contributions": ["code", "ideas"]
     },
     {
       "login": "adrian-lison",
       "name": "Adrian Lison",
       "avatar_url": "https://avatars.githubusercontent.com/u/16266527?v=4",
       "profile": "https://github.com/adrian-lison",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "fengelniederhammer",
       "name": "Fabian Engelniederhammer",
       "avatar_url": "https://avatars.githubusercontent.com/u/92720311?v=4",
       "profile": "https://github.com/fengelniederhammer",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "JonasKellerer",
       "name": "Jonas Kellerer",
       "avatar_url": "https://avatars.githubusercontent.com/u/122305307?v=4",
       "profile": "https://github.com/JonasKellerer",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "philipschulz",
       "name": "Philip Schulz",
       "avatar_url": "https://avatars.githubusercontent.com/u/16674735?v=4",
       "profile": "https://github.com/philipschulz",
-      "contributions": [
-        "code"
-      ]
+      "contributions": ["code"]
     },
     {
       "login": "Taepper",
       "name": "Taepper",
       "avatar_url": "https://avatars.githubusercontent.com/u/25206390?v=4",
       "profile": "https://github.com/Taepper",
-      "contributions": [
-        "code",
-        "ideas",
-        "research"
-      ]
+      "contributions": ["code", "ideas", "research"]
     },
     {
       "login": "GeorgKreuzmayr",
       "name": "GeorgKreuzmayr",
       "avatar_url": "https://avatars.githubusercontent.com/u/68595015?v=4",
       "profile": "https://github.com/GeorgKreuzmayr",
-      "contributions": [
-        "code",
-        "research"
-      ]
+      "contributions": ["code", "research"]
     },
     {
       "login": "danielgrittner",
       "name": "Daniel Grittner",
       "avatar_url": "https://avatars.githubusercontent.com/u/29932077?v=4",
       "profile": "https://github.com/danielgrittner",
-      "contributions": [
-        "code",
-        "research"
-      ]
+      "contributions": ["code", "research"]
     }
   ],
   "contributorsPerLine": 7

package.json

@@ -168,7 +168,7 @@
     "eslint-plugin-unused-imports": "^2.0.0",
     "jest-canvas-mock": "^2.5.0",
     "postcss": "^8.4.38",
-    "prettier": "^2.8.4",
+    "prettier": "^3.3.3",
     "puppeteer": "^19.7.2",
     "resize-observer-polyfill": "^1.5.1",
     "tailwindcss": "^3.2.7",

public/index.html

@@ -1,4 +1,4 @@
-<!DOCTYPE html>
+<!doctype html>
 <html lang="en">
   <head>
     <meta charset="utf-8" />

public/maintenance.html

@@ -1,4 +1,4 @@
-<!DOCTYPE html>
+<!doctype html>
 <html lang="en">
   <head>
     <title>CoV-Spectrum under maintenance</title>

src/components/GridPlot/SequencesOverTimeGrid.tsx

@@ -86,8 +86,8 @@ export const fetchDatePangoLineageCount = async (
           data2.push({
             ...d,
             nextcladePangoLineageFullName: d.nextcladePangoLineage
-              ? (await PangoLineageAliasResolverService.findFullName(d.nextcladePangoLineage)) ??
-                d.nextcladePangoLineage
+              ? ((await PangoLineageAliasResolverService.findFullName(d.nextcladePangoLineage)) ??
+                d.nextcladePangoLineage)
               : null,
           });
         }

src/components/KnownVariantsList/KnownVariantsList.tsx

@@ -123,8 +123,8 @@ const Grid = ({
           isHorizontal
             ? 'w-max grid-flow-col overflow-hidden auto-rows-min auto-cols-min'
             : isLandingPage
-            ? 'grid-cols-2'
-            : 'grid-cols-1'
+              ? 'grid-cols-2'
+              : 'grid-cols-1'
         }`}
       >
         {children}

src/components/NucleotideEntropy/calculateEntropy.tsx

@@ -134,8 +134,8 @@ const meanEntropy = (posEntropy: PositionEntropy[], sequenceType: SequenceType,
           g => gene.startPosition <= parseInt(g.position) && parseInt(g.position) <= gene.endPosition
         )
       : gene.value === 'All'
-      ? posEntropy
-      : posEntropy.filter(g => g.position.includes(gene.value));
+        ? posEntropy
+        : posEntropy.filter(g => g.position.includes(gene.value));
   const sum = filteredPos.map(f => f.entropy).reduce((x, a) => x + a, 0);
   const count = sequenceType === 'nuc' ? gene.endPosition - gene.startPosition : sumOfGenesLength(gene);
   return sum / count;
@@ -168,7 +168,10 @@ export const weeklyMeanEntropy = (
 };
 
 const groupBy = <T, K extends keyof any>(arr: T[], key: (i: T) => K) =>
-  arr.reduce((groups, item) => {
-    (groups[key(item)] ||= []).push(item);
-    return groups;
-  }, {} as Record<K, T[]>);
+  arr.reduce(
+    (groups, item) => {
+      (groups[key(item)] ||= []).push(item);
+      return groups;
+    },
+    {} as Record<K, T[]>
+  );

src/components/NucleotideEntropy/hooks.ts

@@ -171,11 +171,14 @@ function calculateEntropyByTime(
         }))
     )
     .flat()
-    .reduce((aggregated, weeklyMeanEntropy) => {
-      const previousValue = aggregated[weeklyMeanEntropy.day] ?? {};
-      aggregated[weeklyMeanEntropy.day] = { ...previousValue, ...weeklyMeanEntropy };
-      return aggregated;
-    }, {} as Record<number, any>);
+    .reduce(
+      (aggregated, weeklyMeanEntropy) => {
+        const previousValue = aggregated[weeklyMeanEntropy.day] ?? {};
+        aggregated[weeklyMeanEntropy.day] = { ...previousValue, ...weeklyMeanEntropy };
+        return aggregated;
+      },
+      {} as Record<number, any>
+    );
 
   return Object.values(timeMap);
 }

src/components/NucleotideEntropy/useMultiChartData.ts

@@ -68,11 +68,14 @@ export const useMultiChartData = (
         day: week.dateFrom!.dayjs.toDate().getTime(),
         [variants[Math.floor(i / weekRangesCount)]]: meanEntropy,
       }))
-      .reduce((aggregated, weeklyMeanEntropy) => {
-        const previousValue = aggregated[weeklyMeanEntropy.day] ?? {};
-        aggregated[weeklyMeanEntropy.day] = { ...previousValue, ...weeklyMeanEntropy };
-        return aggregated;
-      }, {} as Record<number, any>);
+      .reduce(
+        (aggregated, weeklyMeanEntropy) => {
+          const previousValue = aggregated[weeklyMeanEntropy.day] ?? {};
+          aggregated[weeklyMeanEntropy.day] = { ...previousValue, ...weeklyMeanEntropy };
+          return aggregated;
+        },
+        {} as Record<number, any>
+      );
 
     let plotData = Object.values(weeklyDataByTimestamp); //depending on the day, the latest week just started, so the entropy is calculated as 0 because there are no samples