cleaning up unused files and some code edits #1408
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| name: LAPIS-SILO | |
| on: | |
| push: | |
| concurrency: | |
| group: ci-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| DOCKER_IMAGE_NAME: ghcr.io/GenSpectrum/LAPIS-SILO | |
| DOCKER_TEST_IMAGE_NAME: silo/unittests | |
| jobs: | |
| formatting-check: | |
| name: Formatting Check | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| path: | |
| - check: 'src' | |
| - check: 'include' | |
| exclude: '(PerfEvent.hpp)' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Run clang-format style check | |
| uses: jidicula/[email protected] | |
| with: | |
| clang-format-version: '16' | |
| check-path: ${{ matrix.path['check'] }} | |
| exclude-regex: ${{ matrix.path['exclude'] }} | |
| linter: | |
| name: Build And Run linter | |
| runs-on: ubuntu-latest | |
| steps: | |
| - | |
| uses: actions/checkout@v4 | |
| - | |
| name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - | |
| name: Build linter image | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| push: false | |
| target: linter | |
| tags: ${{ env.DOCKER_TEST_IMAGE_NAME }} | |
| cache-from: type=gha,scope=${{ github.ref_name }}-linter-image-cache | |
| cache-to: type=gha,mode=max,scope=${{ github.ref_name }}-linter-image-cache | |
| file: Dockerfile_linter | |
| dockerImage: | |
| name: Build And Run Unit Tests | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - | |
| name: Build unit test image | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| push: false | |
| load: true | |
| target: builder | |
| tags: ${{ env.DOCKER_TEST_IMAGE_NAME }} | |
| cache-from: type=gha,scope=${{ github.ref_name }}-image-cache | |
| cache-to: type=gha,mode=max,scope=${{ github.ref_name }}-image-cache | |
| - | |
| name: Run tests | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: ${{ env.DOCKER_TEST_IMAGE_NAME }} | |
| run: ./silo_test | |
| - | |
| name: Docker metadata | |
| id: dockerMetadata | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_IMAGE_NAME }} | |
| tags: | | |
| type=ref,event=branch | |
| type=raw,value=latest,enable=${{ github.ref == format('refs/heads/{0}', 'main') }} | |
| - | |
| name: Build and push production image | |
| if: ${{ github.event_name == 'push' }} | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| push: true | |
| tags: ${{ steps.dockerMetadata.outputs.tags }} | |
| endToEndTests: | |
| name: Run End To End Tests | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'push' }} | |
| steps: | |
| - | |
| uses: actions/checkout@v4 | |
| - | |
| name: Use Node.js ${{ matrix.node-version }} | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 18.x | |
| - | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.npm | |
| key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
| - | |
| name: npm install | |
| run: cd endToEndTests && npm ci | |
| - | |
| name: Check Format | |
| run: cd endToEndTests && npm run check-format | |
| - | |
| name: Docker Metadata | |
| id: dockerMetadata | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: ${{ env.DOCKER_IMAGE_NAME }} | |
| tags: type=ref,event=branch | |
| - | |
| name: Wait for Docker Image | |
| uses: lewagon/[email protected] | |
| with: | |
| ref: ${{ github.ref }} | |
| check-name: Build And Run Unit Tests | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Start Docker Container and preprocess data | |
| run: docker compose -f docker-compose-for-tests-preprocessing.yml up | |
| env: | |
| SILO_IMAGE: ${{ steps.dockerMetadata.outputs.tags }} | |
| - name: Start Docker Container and run api | |
| run: docker compose -f docker-compose-for-tests-api.yml up -d --wait | |
| env: | |
| SILO_IMAGE: ${{ steps.dockerMetadata.outputs.tags }} | |
| - | |
| name: Run Tests | |
| run: cd endToEndTests && SILO_URL=localhost:8080 npm run test |