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Updated to MSigDB v7.5
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@davideby
davideby committed Jan 13, 2022
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5 changes: 5 additions & 0 deletions docs/v20/index.html
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Expand Up @@ -409,6 +409,11 @@ <h2>Version Comments</h2>
</tr>
</thead>
<tbody>
<tr>
<td>20.3.2</td>
<td>2022-1-12</td>
<td>Updated to MSigDB v7.5.</td>
</tr>
<tr>
<td>20.3.1</td>
<td>2021-12-23</td>
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5 changes: 5 additions & 0 deletions docs/v20/test.md
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Expand Up @@ -475,6 +475,11 @@ Java
</tr>
</thead>
<tbody>
<tr class="even">
<td align="left">20.3.2</td>
<td align="left">2022-1-12</td>
<td align="left">Updated to MSigDB v7.5.</td>
</tr>
<tr class="odd">
<td align="left">20.3.1</td>
<td align="left">2021-12-23</td>
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4 changes: 2 additions & 2 deletions manifest
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Expand Up @@ -40,7 +40,7 @@ p2_optional=
p2_prefix=
p2_prefix_when_specified=
p2_type=java.io.File
p2_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.4.symbols.gmt\=c1.all.v7.4.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.4.symbols.gmt\=c2.all.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.4.symbols.gmt\=c2.cgp.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.4.symbols.gmt\=c2.cp.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.4.symbols.gmt\=c2.cp.biocarta.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.4.symbols.gmt\=c2.cp.kegg.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.4.symbols.gmt\=c2.cp.pid.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.4.symbols.gmt\=c2.cp.reactome.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.wikipathways.v7.4.symbols.gmt\=c2.cp.wikipathways.v7.4.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.4.symbols.gmt\=c3.all.v7.4.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.4.symbols.gmt\=c3.mir.v7.4.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mirdb.v7.4.symbols.gmt\=c3.mir.mirdb.v7.4.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mir_legacy.v7.4.symbols.gmt\=c3.mir.mir_legacy.v7.4.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.4.symbols.gmt\=c3.tft.v7.4.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.gtrd.v7.4.symbols.gmt\=c3.tft.gtrd.v7.4.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.tft_legacy.v7.4.symbols.gmt\=c3.tft.tft_legacy.v7.4.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.4.symbols.gmt\=c4.all.v7.4.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.4.symbols.gmt\=c4.cgn.v7.4.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.4.symbols.gmt\=c4.cm.v7.4.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.4.symbols.gmt\=c5.all.v7.4.symbols.gmt [Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.v7.4.symbols.gmt\=c5.go.v7.4.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.bp.v7.4.symbols.gmt\=c5.go.bp.v7.4.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.cc.v7.4.symbols.gmt\=c5.go.cc.v7.4.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.mf.v7.4.symbols.gmt\=c5.go.mf.v7.4.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.hpo.v7.4.symbols.gmt\=c5.hpo.v7.4.symbols.gmt [Human Phenotype Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.4.symbols.gmt\=c6.all.v7.4.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.4.symbols.gmt\=c7.all.v7.4.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.immunesigdb.v7.4.symbols.gmt\=c7.immunesigdb.v7.4.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.vax.v7.4.symbols.gmt\=c7.vax.v7.4.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c8.all.v7.4.symbols.gmt\=c8.all.v7.4.symbols.gmt [cell type signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.4.symbols.gmt\=h.all.v7.4.symbols.gmt [Hallmarks]
p2_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.5.symbols.gmt\=c1.all.v7.5.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.5.symbols.gmt\=c2.all.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.5.symbols.gmt\=c2.cgp.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.5.symbols.gmt\=c2.cp.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.5.symbols.gmt\=c2.cp.biocarta.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.5.symbols.gmt\=c2.cp.kegg.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.5.symbols.gmt\=c2.cp.pid.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.5.symbols.gmt\=c2.cp.reactome.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.wikipathways.v7.5.symbols.gmt\=c2.cp.wikipathways.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.5.symbols.gmt\=c3.all.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.5.symbols.gmt\=c3.mir.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mirdb.v7.5.symbols.gmt\=c3.mir.mirdb.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mir_legacy.v7.5.symbols.gmt\=c3.mir.mir_legacy.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.5.symbols.gmt\=c3.tft.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.gtrd.v7.5.symbols.gmt\=c3.tft.gtrd.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.tft_legacy.v7.5.symbols.gmt\=c3.tft.tft_legacy.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.5.symbols.gmt\=c4.all.v7.5.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.5.symbols.gmt\=c4.cgn.v7.5.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.5.symbols.gmt\=c4.cm.v7.5.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.5.symbols.gmt\=c5.all.v7.5.symbols.gmt [Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.v7.5.symbols.gmt\=c5.go.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.bp.v7.5.symbols.gmt\=c5.go.bp.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.cc.v7.5.symbols.gmt\=c5.go.cc.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.mf.v7.5.symbols.gmt\=c5.go.mf.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.hpo.v7.5.symbols.gmt\=c5.hpo.v7.5.symbols.gmt [Human Phenotype Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.5.symbols.gmt\=c6.all.v7.5.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.5.symbols.gmt\=c7.all.v7.5.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.immunesigdb.v7.5.symbols.gmt\=c7.immunesigdb.v7.5.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.vax.v7.5.symbols.gmt\=c7.vax.v7.5.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c8.all.v7.5.symbols.gmt\=c8.all.v7.5.symbols.gmt [cell type signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.5.symbols.gmt\=h.all.v7.5.symbols.gmt [Hallmarks]

p3_MODE=
p3_TYPE=Integer
Expand Down Expand Up @@ -417,6 +417,6 @@ serializedModel=
taskType=Pathway Analysis
categories=gsea;pathway analysis
[email protected]
version=Updated with the GSEA Desktop 4.2.1 code base. Updated to Log4J 2.17.0. TXT file parser bug fix.
version=Updated to MSigDB v7.5.

publicationDate=10/05/2018 04\:51
6 changes: 3 additions & 3 deletions release.properties
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@@ -1,5 +1,5 @@
#Wed, 22 Dec 2021 22:14:09 -0800
#Wed, 12 Jan 2022 17:18:40 -0800
LSID.noVersion=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00072
release.version=20.3
build.number=1
build.timestamp=Wed, 22 Dec 2021 22\:14\:09 -0800
build.number=2
build.timestamp=Wed, 12 Jan 2022 17\:18\:40 -0800

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