Updates for GSEA 4.1.0

GSEA-MSigDB · Jul 30, 2020 · 41fb0dd · 41fb0dd
1 parent 8c81bbd
commit 41fb0dd
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Showing 5 changed files with 26 additions and 16 deletions.
diff --git a/build.xml b/build.xml
@@ -9,11 +9,11 @@
             <format property="publish.time.short" pattern="MM/dd/yyyy " />
         </tstamp>
         <property environment="env" />
-        <property name="desktop.prod.version" value="4.0.3" />
+        <property name="desktop.prod.version" value="4.1.0" />
         <property name="test.version" value="999999999"/>
         <property name="dest.dir" value="build" />
         <mkdir dir="build" />
-        <property name="dataBroadBaseUrl" value="https://data.broadinstitute.org/gsea-msigdb/gsea/software/desktop/4.0" />
+        <property name="dataBroadBaseUrl" value="https://data.broadinstitute.org/gsea-msigdb/gsea/software/desktop/4.1" />
     </target>
 
     <target name="init_devrelease" depends="init" description="internal target used by other init_devrelease_* targets; do not use directly">

diff --git a/docs/v20/index.html b/docs/v20/index.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- saved from url=(0083)http://software.broadinstitute.org/cancer/software/genepattern/modules/docs/GSEA/18 -->
 <html class=""><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
-  <title>GSEA (v20.0.x)</title>
+  <title>GSEA (v20.1.x)</title>
   <link href="./application.css" media="all" rel="stylesheet">
   <script src="./application.js"></script><style>.cke{visibility:hidden;}</style><style type="text/css"></style>
   <meta http-equiv="X-UA-Compatible" content="IE=edge">
@@ -15,7 +15,7 @@
 
 	<div class="gp-content-header fluid">
 	<div class="container">
-		<h1>GSEA (v20.0.x) <a style="float: right" href="https://www.genepattern.org"><img alt="GP Logo" src="gplogo.png" /></a></h1>
+		<h1>GSEA (v20.1.x) <a style="float: right" href="https://www.genepattern.org"><img alt="GP Logo" src="gplogo.png" /></a></h1>
 	</div>
 </div>
 <div class="container">
@@ -33,7 +33,7 @@ <h1>GSEA (v20.0.x) <a style="float: right" href="https://www.genepattern.org"><i
 <p></p>
 				</div>
 				<div class="col-sm-4">
-					<p><strong>GSEA Version: </strong> 4.0.3</p>
+					<p><strong>GSEA Version: </strong> 4.1.0</p>
 				</div>
 			</div>
 
@@ -124,8 +124,8 @@ <h2>References</h2>
 
 <p>GSEA website: <a href="http://www.gsea-msigdb.org/">http://www.gsea-msigdb.org/</a></p>
 
-<p>This version of the module is based on the GSEA v4.0.2 code base.  See the 
-<a href="http://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.x_Release_Notes">Release Notes</a> for new features and other notable changes.
+<p>This version of the module is based on the GSEA v4.1.x code base.  See the 
+<a href="http://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.1.x_Release_Notes">Release Notes</a> for new features and other notable changes.
 </p>
 
 				</div>
@@ -410,6 +410,11 @@ <h2>Version Comments</h2>
 					</tr>
 				</thead>
 				<tbody>
+                        <tr>
+                            <td>20.1.0</td>
+                            <td>2020-7-30</td>
+                            <td>Updated to use the GSEA v4.1.0 code base.</td>
+                        </tr>
                         <tr>
                             <td>20.0.5</td>
                             <td>2020-4-2</td>

diff --git a/docs/v20/test.md b/docs/v20/test.md
@@ -1,4 +1,4 @@
-# GSEA (v20.0.x)
+# GSEA (v20.1.x)
 
 Gene Set Enrichment Analysis
 
@@ -14,7 +14,7 @@ for GSEA questions.
 team](http://software.broadinstitute.org/cancer/software/genepattern/contact)
 for GenePattern issues.
 
-**GSEA Version:** 4.0.3
+**GSEA Version:** 4.1.0
 
 ## Description
 
@@ -199,9 +199,9 @@ GSEA User Guide:
 
 GSEA website: <http://www.gsea-msigdb.org/>
 
-This version of the module is based on the GSEA v4.0.2 code base. See
+This version of the module is based on the GSEA v4.1.x code base. See
 the [Release
-Notes](http://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.0.x_Release_Notes)
+Notes](http://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/GSEA_v4.1.x_Release_Notes)
 for new features and other notable changes.
 
 ## Parameters
@@ -476,6 +476,11 @@ Java
 </tr>
 </thead>
 <tbody>
+<tr class="even">
+<td align="left">20.1.0</td>
+<td align="left">2020-7-30</td>
+<td align="left">Updated to use the GSEA v4.1.0 code base.</td>
+</tr>
 <tr class="odd">
 <td align="left">20.0.5</td>
 <td align="left">2020-4-2</td>

diff --git a/manifest b/manifest
@@ -430,6 +430,6 @@ serializedModel=
 taskType=Gene List Selection
 category=
 [email protected]
-version=Updated to use the GSEA v4.0.3 code base.  Updated to give access to MSigDB v7.1.
+version=Updated to use the GSEA v4.1.0 code base.
 
 publicationDate=10/05/2018 04\:51 
diff --git a/release.properties b/release.properties
@@ -1,5 +1,5 @@
-#Thu, 02 Apr 2020 09:03:54 +0900
+#Thu, 30 Jul 2020 16:06:26 -0700
 LSID.noVersion=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00072
-release.version=20.0
-build.number=5
-build.timestamp=Thu, 2 Apr 2020 09\:03\:54 +0900
+release.version=20.1
+build.number=0
+build.timestamp=Thu, 30 Jul 2020 16\:06\:26 -0700