Updated for MSigDB v7.3

docs/v20/index.html

@@ -384,7 +384,7 @@ <h2>Platform Dependencies</h2>
 			<div class="row">
 				<div class="col-md-3">
 					<p><strong>Task Type:</strong><br>
-					Gene List Selection</p>
+					Pathway Analysis</p>
 				</div>
 				<div class="col-md-3">
 					<p><strong>CPU Type:</strong><br>
@@ -410,6 +410,11 @@ <h2>Version Comments</h2>
 					</tr>
 				</thead>
 				<tbody>
+                        <tr>
+                            <td>20.2.2</td>
+                            <td>2021-3-22</td>
+                            <td>Updated to MSigDB v7.3.</td>
+                        </tr>
                         <tr>
                             <td>20.2.1</td>
                             <td>2020-10-27</td>
@@ -498,7 +503,7 @@ <h2>Version Comments</h2>
 
 
 	<footer class="container fluid gp-footer">
-	<div class="fluid text-center">Copyright © 2003-2020 Broad Institute, Inc., Massachusetts Institute of Technology, and Regents of the University of California.  All rights reserved.</div> 
+	<div class="fluid text-center">Copyright © 2003-2021 Broad Institute, Inc., Massachusetts Institute of Technology, and Regents of the University of California.  All rights reserved.</div> 
 </footer>
 
 

docs/v20/test.md

@@ -476,6 +476,11 @@ Java
 </tr>
 </thead>
 <tbody>
+<tr class="odd">
+<td align="left">20.2.2</td>
+<td align="left">2021-3-22</td>
+<td align="left">Updated to MSigDB v7.3.</td>
+</tr>
 <tr class="even">
 <td align="left">20.2.1</td>
 <td align="left">2020-10-27</td>
@@ -559,7 +564,7 @@ Java
 </tbody>
 </table>
 
-Copyright © 2003-2020 Broad Institute, Inc., Massachusetts Institute of
+Copyright © 2003-2021 Broad Institute, Inc., Massachusetts Institute of
 Technology, and Regents of the University of California. All rights
 reserved.
 

manifest

@@ -40,7 +40,7 @@ p2_optional=
 p2_prefix=
 p2_prefix_when_specified=
 p2_type=java.io.File
-p2_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.2.symbols.gmt\=c1.all.v7.2.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.2.symbols.gmt\=c2.all.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.2.symbols.gmt\=c2.cgp.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.2.symbols.gmt\=c2.cp.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.2.symbols.gmt\=c2.cp.biocarta.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.2.symbols.gmt\=c2.cp.kegg.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.2.symbols.gmt\=c2.cp.pid.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.2.symbols.gmt\=c2.cp.reactome.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.wikipathways.v7.2.symbols.gmt\=c2.cp.wikipathways.v7.2.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.2.symbols.gmt\=c3.all.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.2.symbols.gmt\=c3.mir.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mirdb.v7.2.symbols.gmt\=c3.mir.mirdb.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mir_legacy.v7.2.symbols.gmt\=c3.mir.mir_legacy.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.2.symbols.gmt\=c3.tft.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.gtrd.v7.2.symbols.gmt\=c3.tft.gtrd.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.tft_legacy.v7.2.symbols.gmt\=c3.tft.tft_legacy.v7.2.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.2.symbols.gmt\=c4.all.v7.2.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.2.symbols.gmt\=c4.cgn.v7.2.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.2.symbols.gmt\=c4.cm.v7.2.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.2.symbols.gmt\=c5.all.v7.2.symbols.gmt [Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.v7.2.symbols.gmt\=c5.go.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.bp.v7.2.symbols.gmt\=c5.go.bp.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.cc.v7.2.symbols.gmt\=c5.go.cc.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.mf.v7.2.symbols.gmt\=c5.go.mf.v7.2.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.hpo.v7.2.symbols.gmt\=c5.hpo.v7.2.symbols.gmt [Human Phenotype Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.2.symbols.gmt\=c6.all.v7.2.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.2.symbols.gmt\=c7.all.v7.2.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c8.all.v7.2.symbols.gmt\=c8.all.v7.2.symbols.gmt [cell type signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.2.symbols.gmt\=h.all.v7.2.symbols.gmt [Hallmarks]
+p2_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.3.symbols.gmt\=c1.all.v7.3.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.3.symbols.gmt\=c2.all.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.3.symbols.gmt\=c2.cgp.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.3.symbols.gmt\=c2.cp.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.3.symbols.gmt\=c2.cp.biocarta.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.3.symbols.gmt\=c2.cp.kegg.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.3.symbols.gmt\=c2.cp.pid.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.3.symbols.gmt\=c2.cp.reactome.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.wikipathways.v7.3.symbols.gmt\=c2.cp.wikipathways.v7.3.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.3.symbols.gmt\=c3.all.v7.3.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.3.symbols.gmt\=c3.mir.v7.3.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mirdb.v7.3.symbols.gmt\=c3.mir.mirdb.v7.3.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mir_legacy.v7.3.symbols.gmt\=c3.mir.mir_legacy.v7.3.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.3.symbols.gmt\=c3.tft.v7.3.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.gtrd.v7.3.symbols.gmt\=c3.tft.gtrd.v7.3.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.tft_legacy.v7.3.symbols.gmt\=c3.tft.tft_legacy.v7.3.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.3.symbols.gmt\=c4.all.v7.3.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.3.symbols.gmt\=c4.cgn.v7.3.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.3.symbols.gmt\=c4.cm.v7.3.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.3.symbols.gmt\=c5.all.v7.3.symbols.gmt [Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.v7.3.symbols.gmt\=c5.go.v7.3.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.bp.v7.3.symbols.gmt\=c5.go.bp.v7.3.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.cc.v7.3.symbols.gmt\=c5.go.cc.v7.3.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.mf.v7.3.symbols.gmt\=c5.go.mf.v7.3.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.hpo.v7.3.symbols.gmt\=c5.hpo.v7.3.symbols.gmt [Human Phenotype Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.3.symbols.gmt\=c6.all.v7.3.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.3.symbols.gmt\=c7.all.v7.3.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.immunesigdb.v7.3.symbols.gmt\=c7.immunesigdb.v7.3.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.vax.v7.3.symbols.gmt\=c7.vax.v7.3.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c8.all.v7.3.symbols.gmt\=c8.all.v7.3.symbols.gmt [cell type signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.3.symbols.gmt\=h.all.v7.3.symbols.gmt [Hallmarks]
 
 p3_MODE=
 p3_TYPE=Integer
@@ -427,9 +427,9 @@ quality=development
 requiredPatchLSIDs=
 requiredPatchURLs=
 serializedModel=
-taskType=Gene List Selection
-category=
+taskType=Pathway Analysis
+category=gsea,pathway analysis
 [email protected]
-version=Fixed a bug in the Collapse Sum mode.
+version=Updated for MSigDB v7.3.
 
 publicationDate=10/05/2018 04\:51 

release.properties

@@ -1,5 +1,5 @@
-#Tue, 27 Oct 2020 13:45:45 +0900
+#Mon, 22 Mar 2021 13:43:25 -0700
 LSID.noVersion=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00072
 release.version=20.2
-build.number=1
-build.timestamp=Tue, 27 Oct 2020 13\:45\:45 +0900
+build.number=2
+build.timestamp=Mon, 22 Mar 2021 13\:43\:25 -0700