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{{$NEXT}} | ||
# Release 1.16.9 2020-05-21 16:50:24 UTC | ||
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## Minor improvements | ||
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--- | ||
layout: post | ||
title: JBrowse 1.16.9 maintenance release | ||
date: 2020-05-21 | ||
tags: ["News","Software releases"] | ||
--- | ||
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Hi all! I am pleased to announce JBrowse 1.16.9 | ||
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This contains a couple small bugfixes and features and includes great feedback from the community. Thanks to our users, issue creators, and PR submitters! | ||
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* [JBrowse-1.16.9.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.9-release/JBrowse-1.16.9.zip) - minified release | ||
* [JBrowse-1.16.9-dev.zip](https://github.com/GMOD/jbrowse/archive/1.16.9-release.zip) - use this if you modify jbrowse source code or use plugins | ||
* [JBrowse-1.16.9-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.9-release/JBrowse-1.16.9-desktop-win32-x64.zip) | ||
* [JBrowse-1.16.9-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.9-release/JBrowse-1.16.9-desktop-linux-x64.zip) | ||
* [JBrowse-1.16.9-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.9-release/JBrowse-1.16.9-desktop-darwin-x64.zip) | ||
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## Minor improvements | ||
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* Added a 'Reset to defaults' menu item, which addresses a long standing | ||
issue. Thanks to a user with a very long github name for their | ||
contribution (<a href="https://github.com/gmod/jbrowse/pull/1496">issue #1496</a>, <a href="https://github.com/gmod/jbrowse/issues/764">issue #764</a>). | ||
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* Disable coordinate indicator on tab switch, thanks <a href="https://github.com/lukaw3d">@lukaw3d</a> (<a href="https://github.com/gmod/jbrowse/pull/1497">issue #1497</a>) | ||
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* Small optimization bumping <a href="https://github.com/gmod">@gmod</a>/bam from version 1.0.35->1.0.36 (<a href="https://github.com/cmdcolin">@cmdcolin</a>) | ||
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* Add ability to include/hide variant filters instead of just hide | ||
(<a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/gmod/jbrowse/issues/1478">issue #1478</a>) | ||
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* Add ability to color by TS tag. The useXS config now applies to `XS` and | ||
`TS`, and the useTS tag only applies to the lower-case `ts` tag used by | ||
minimap2 (<a href="https://github.com/gmod/jbrowse/pull/1493">issue #1493</a>, <a href="https://github.com/cmdcolin">@cmdcolin</a>) | ||
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## Bug fixes | ||
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* Fixed a race condition in the http-range-fetcher module that caused | ||
"Error: "failed to retrieve file size"" messages when many tracks | ||
were opened at once. Thanks to <a href="https://github.com/russellmyers">@russellmyers</a> for the bug report! | ||
(<a href="https://github.com/gmod/jbrowse/issues/1473">issue #1473</a>) | ||
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* Fixed error with exporting highlighted regions with Save track data, | ||
thanks to <a href="https://github.com/lipan6461188">@lipan6461188</a> for reporting (<a href="https://github.com/gmod/jbrowse/issues/1488">issue #1488</a>) | ||
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* Fixed ability to have custom mouseovers on features that have no | ||
default mouseover e.g. features with no name or ID. Thanks to | ||
<a href="https://github.com/scottcain">@scottcain</a> for reporting (<a href="https://github.com/gmod/jbrowse/pull/1487">issue #1487</a>) | ||
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* Fixed the response for requests to HTTP 403 errors. Thanks to | ||
<a href="https://github.com/ilaydabozan">@ilaydabozan</a> for reporting (<a href="https://github.com/gmod/jbrowse/issues/1490">issue #1490</a>) | ||
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* When there is only a single coordinate column in a tabix file, there | ||
is now improved performance since the overlap checking code was | ||
incorrect before in <a href="https://github.com/gmod">@gmod</a>/tabix (<a href="https://github.com/cmdcolin">@cmdcolin</a>) | ||
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* Fix usage of bigwig "scoreType":"maxScore" config for bigwig tracks | ||
(<a href="https://github.com/cmdcolin">@cmdcolin</a>, <a href="https://github.com/gmod/jbrowse/issues/1380">issue #1380</a>) | ||
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* Fix a crash related to NCList histogram when a featureScale is applied | ||
(<a href="https://github.com/gmod/jbrowse/issues/1327">issue #1327</a>) | ||
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* Make it so that VCF tracks don't require CORS headers for Content-Range | ||
(<a href="https://github.com/cmdcolin">@cmdcolin</a>) | ||
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