GEOS-ESM · mathomp4 · Nov 13, 2024 · Nov 11, 2024 · Nov 12, 2024 · Nov 12, 2024
@@ -17,6 +17,18 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Deprecated
 
+## [4.9.0] - 2024-11-13
+
+### Fixed
+
+- Fixed `mepo status` code to allow for quiet failures. There seems to be an odd scenario on non-internet-connected machines where `mepo status` will fail in blobless clones of some repos. Running `mepo status` on a node with internet access seems to fix this. 
+
+### Changed
+
+- For F2PY3 code, set CMake Policy CMP0132 if Python is 3.12+ or higher
+- Add test to see if `ifort` spits out the deprecation warning. Needed to hack f2py/meson
+- Set minimum CMake version to 3.24 for the meson + f2py fix
+
 ## [4.8.1] - 2024-11-07
 
 ### Fixed

@@ -8,3 +8,28 @@ try_fortran_compile(
   ${CMAKE_CURRENT_LIST_DIR}/findloc.F90
   FORTRAN_COMPILER_SUPPORTS_FINDLOC
   )
+
+# We also need to do something if we are using Intel Fortran Classic
+# Namely, we need to know if when we run just plain 'ifort' if
+# anything is output to stderr. If so, we need to set a CMake variable
+# that will allow us to do something different later in the
+# CMake process.
+
+if (CMAKE_Fortran_COMPILER_ID STREQUAL "Intel")
+  if (NOT CMAKE_REQUIRED_QUIET)
+    message (STATUS "Checking if Intel Fortran Classic compiler has deprecation warning")
+  endif ()
+  execute_process(
+    COMMAND ${CMAKE_Fortran_COMPILER} --version
+    OUTPUT_QUIET
+    RESULT_VARIABLE IFORT_RESULT
+    ERROR_VARIABLE IFORT_STDERR
+    )
+  if (IFORT_STDERR)
+    message (STATUS "Checking if Intel Fortran Classic compiler has deprecation warning: FOUND")
+    message (STATUS "Setting IFORT_HAS_DEPRECATION_WARNING to TRUE")
+    set (IFORT_HAS_DEPRECATION_WARNING TRUE)
+  else ()
+    message (STATUS "Checking if Intel Fortran Classic compiler has deprecation warning: NOT FOUND")
+  endif ()
+endif ()
@@ -20,10 +20,11 @@ function(esma_capture_mepo_status)
         WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
         OUTPUT_FILE "${OUTPUT_FILE}"
         RESULT_VARIABLE MEPO_STATUS_RESULT
+        ERROR_QUIET
       )
 
       if(NOT MEPO_STATUS_RESULT EQUAL 0)
-        message(WARNING "mepo state and command were found but failed to run mepo status --hashes. This is odd.")
+        message(WARNING "mepo state and command were found but failed to run mepo status --hashes. This seems to happen with blobless clones and running on a node without access to the internet. Skipping mepo status output capture, but to fix, run mepo status on a node with internet access.")
       else()
         message(STATUS "mepo status output captured in ${OUTPUT_FILE_NAME}")
 

@@ -1,7 +1,8 @@
 # CMake code involving Python
 
 # FIND_STRATEGY needs CMake 3.15 or later
-cmake_minimum_required(VERSION 3.15)
+# The new policy needed for f2py3 and Meson is 3.24
+cmake_minimum_required(VERSION 3.24)
 
 # Find Python
 find_package(Python COMPONENTS Interpreter)

@@ -40,14 +40,23 @@ find_program(F2PY_EXECUTABLE NAMES "f2py${Python_VERSION_MAJOR}.${Python_VERSION
 if(F2PY_EXECUTABLE)
    # extract the version string
    execute_process(COMMAND "${F2PY_EXECUTABLE}" -v
-                     OUTPUT_VARIABLE F2PY_VERSION_STRING
-                     OUTPUT_STRIP_TRAILING_WHITESPACE)
+                   OUTPUT_VARIABLE F2PY_VERSION_STRING
+                   OUTPUT_STRIP_TRAILING_WHITESPACE)
    if("${F2PY_VERSION_STRING}" MATCHES "^([0-9]+)(.([0-9+]))?(.([0-9+]))?$")
       set(F2PY_VERSION_MAJOR "${CMAKE_MATCH_1}")
       set(F2PY_VERSION_MINOR "${CMAKE_MATCH_3}")
       set(F2PY_VERSION_PATCH "${CMAKE_MATCH_5}")
    endif()
 
+   # Testing has shown that f2py with Python 3.12+ needs to set
+   # a new CMake policy, CMP0132, because f2py uses Meson in the
+   # instead of distutils.
+   # See https://github.com/mesonbuild/meson/issues/13882
+   if (Python_VERSION_MINOR GREATER_EQUAL 12)
+     message(STATUS "[F2PY]: Setting CMP0132 policy to NEW")
+     cmake_policy(SET CMP0132 NEW)
+   endif ()
+
    # Get the compiler-id and map it to compiler vendor as used by f2py.
    # Currently, we only check for GNU, but this can easily be extended.
    # Cache the result, so that we only need to check once.

@@ -74,11 +74,32 @@ macro (add_f2py_module _name)
 
   #message(STATUS "${_name} F2PY_Fortran_FLAGS ${F2PY_Fortran_FLAGS}")
 
-  set(_fcompiler_opts "--fcompiler=${F2PY_FCOMPILER}")
-  list(APPEND _fcompiler_opts "--f77exec=${CMAKE_Fortran_COMPILER}" "--f77flags='${F2PY_Fortran_FLAGS}'")
-  if(CMAKE_Fortran_COMPILER_SUPPORTS_F90)
-     list(APPEND _fcompiler_opts "--f90exec=${CMAKE_Fortran_COMPILER}" "--f90flags='${F2PY_Fortran_FLAGS}'")
-  endif(CMAKE_Fortran_COMPILER_SUPPORTS_F90)
+  # NOTE: This style of calling f2py is only for distutils. If you are using
+  #       Python 3.12, the backend is now meson and this will not work
+  #       so we need to test the Python version and then call the correct
+  #       f2py
+
+  if (Python_VERSION VERSION_GREATER_EQUAL "3.12")
+    set(F2PY_BACKEND "meson")
+  else ()
+    set(F2PY_BACKEND "distutils")
+  endif ()
+
+  #message(STATUS "Using F2PY_BACKEND: ${F2PY_BACKEND}")
+
+  if (F2PY_BACKEND STREQUAL "distutils")
+    set(_fcompiler_opts "--fcompiler=${F2PY_FCOMPILER}")
+    list(APPEND _fcompiler_opts "--f77exec=${CMAKE_Fortran_COMPILER}" "--f77flags='${F2PY_Fortran_FLAGS}'")
+    if(CMAKE_Fortran_COMPILER_SUPPORTS_F90)
+      list(APPEND _fcompiler_opts "--f90exec=${CMAKE_Fortran_COMPILER}" "--f90flags='${F2PY_Fortran_FLAGS}'")
+    endif(CMAKE_Fortran_COMPILER_SUPPORTS_F90)
+  else ()
+    set(_fcompiler_opts "")
+    list(APPEND _fcompiler_opts "--f77flags='${F2PY_Fortran_FLAGS}'")
+    if(CMAKE_Fortran_COMPILER_SUPPORTS_F90)
+      list(APPEND _fcompiler_opts "--f90flags='${F2PY_Fortran_FLAGS}'")
+    endif(CMAKE_Fortran_COMPILER_SUPPORTS_F90)
+  endif ()
 
   # Make the source filenames absolute.
   set(_abs_srcs)
@@ -87,6 +108,13 @@ macro (add_f2py_module _name)
     list(APPEND _abs_srcs ${_abs_src})
   endforeach(_src ${add_f2py_module_SOURCES})
 
+  # Let's also get all directories that the sources are in
+  set(_src_inc_dirs)
+  foreach(_src ${_abs_srcs})
+    get_filename_component(_dir ${_src} DIRECTORY)
+    list(APPEND _src_inc_dirs ${_dir})
+  endforeach(_src ${_abs_srcs})
+
   # Get a list of the include directories.
   # The f2py --include_paths option, used when generating a signature file,
   # needs a colon-separated list. The f2py -I option, used when compiling
@@ -103,6 +131,12 @@ macro (add_f2py_module _name)
   endforeach(_dir)
   string(REPLACE ";" ":" _inc_paths "${_inc_dirs}")
 
+  # We also want to include the directory where the
+  # sources are located as well into _inc_opts
+  foreach(_dir ${_src_inc_dirs})
+    list(APPEND _inc_opts "-I${_dir}")
+  endforeach(_dir)
+
   set(_libs_opts)
   foreach(_lib ${add_f2py_module_LIBRARIES})
      # MAT This is hacky, but so is this whole code
@@ -189,8 +223,8 @@ macro (add_f2py_module _name)
             continue()
           endif ()
         endif ()
-
         list(APPEND _lib_opts "-l${_lib}")
+
       endforeach()
 
     else()
@@ -227,25 +261,43 @@ macro (add_f2py_module _name)
 
   # Define the command to generate the Fortran to Python interface module. The
   # output will be a shared library that can be imported by python.
-  if ( "${add_f2py_module_SOURCES}" MATCHES "^[^;]*\\.pyf;" )
-    add_custom_command(OUTPUT "${_name}${F2PY_SUFFIX}"
-      COMMAND ${F2PY_EXECUTABLE} ${F2PY_QUIET} -m ${_name}
-              --build-dir "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}"
-              ${_fcompiler_opts} ${_inc_opts} -c ${_abs_srcs} ${REDIRECT_TO_DEV_NULL}
-      DEPENDS ${add_f2py_module_SOURCES}
-      COMMENT "[F2PY] Building Fortran to Python interface module ${_name}")
-  else ( "${add_f2py_module_SOURCES}" MATCHES "^[^;]*\\.pyf;" )
+  # We also need to set FC in the environment to the fortran compiler
+  #message(STATUS "add_f2py_module_SOURCES: ${add_f2py_module_SOURCES}")
+  #message(STATUS "_inc_opts: ${_inc_opts}")
+  if ( F2PY_BACKEND STREQUAL "meson")
+    if(IFORT_HAS_DEPRECATION_WARNING)
+      set(MESON_F2PY_FCOMPILER "ifort -diag-disable=10448")
+    else()
+      set(MESON_F2PY_FCOMPILER "${CMAKE_Fortran_COMPILER}")
+    endif()
     add_custom_command(OUTPUT "${_name}${F2PY_SUFFIX}"
-      COMMAND ${F2PY_EXECUTABLE} ${F2PY_QUIET} -m ${_name} -h ${_name}.pyf
-              --build-dir "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}"
-              --include-paths ${_inc_paths} --overwrite-signature ${_abs_srcs} ${REDIRECT_TO_DEV_NULL}
-      COMMAND ${F2PY_EXECUTABLE} ${F2PY_QUIET} -m ${_name}
+      COMMAND ${CMAKE_COMMAND} -E env "FC=${MESON_F2PY_FCOMPILER}"
+              ${F2PY_EXECUTABLE} ${F2PY_QUIET} -m ${_name}
               --build-dir "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}"
-              -c "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}/${_name}.pyf"
-              ${_fcompiler_opts} ${_inc_opts} ${_lib_opts} ${_abs_srcs} ${_lib_opts} ${_only} ${REDIRECT_TO_DEV_NULL}
+              ${_fcompiler_opts} ${_inc_opts} ${_lib_opts} -c ${_abs_srcs} ${REDIRECT_TO_DEV_NULL}
       DEPENDS ${add_f2py_module_SOURCES}
       COMMENT "[F2PY] Building Fortran to Python interface module ${_name}")
-  endif ( "${add_f2py_module_SOURCES}" MATCHES "^[^;]*\\.pyf;" )
+  else ()
+    if ( "${add_f2py_module_SOURCES}" MATCHES "^[^;]*\\.pyf;" )
+      add_custom_command(OUTPUT "${_name}${F2PY_SUFFIX}"
+        COMMAND ${F2PY_EXECUTABLE} ${F2PY_QUIET} -m ${_name}
+                --build-dir "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}"
+                ${_fcompiler_opts} ${_inc_opts} -c ${_abs_srcs} ${REDIRECT_TO_DEV_NULL}
+        DEPENDS ${add_f2py_module_SOURCES}
+        COMMENT "[F2PY] Building Fortran to Python interface module ${_name}")
+    else ( "${add_f2py_module_SOURCES}" MATCHES "^[^;]*\\.pyf;" )
+      add_custom_command(OUTPUT "${_name}${F2PY_SUFFIX}"
+        COMMAND ${F2PY_EXECUTABLE} ${F2PY_QUIET} -m ${_name} -h ${_name}.pyf
+                --build-dir "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}"
+                --include-paths ${_inc_paths} --overwrite-signature ${_abs_srcs} ${REDIRECT_TO_DEV_NULL}
+        COMMAND ${F2PY_EXECUTABLE} ${F2PY_QUIET} -m ${_name}
+                --build-dir "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}"
+                -c "${CMAKE_CURRENT_BINARY_DIR}/f2py-${_name}/${_name}.pyf"
+                ${_fcompiler_opts} ${_inc_opts} ${_lib_opts} ${_abs_srcs} ${_lib_opts} ${_only} ${REDIRECT_TO_DEV_NULL}
+        DEPENDS ${add_f2py_module_SOURCES}
+        COMMENT "[F2PY] Building Fortran to Python interface module ${_name}")
+    endif ( "${add_f2py_module_SOURCES}" MATCHES "^[^;]*\\.pyf;" )
+  endif ()
 
 
 

@@ -2,27 +2,18 @@ macro (esma_add_f2py_module name)
 
   add_f2py_module (${name} ${ARGN})
 
-  if (NOT CMAKE_Fortran_COMPILER_ID MATCHES GNU)
-    set(UNIT_TEST test_${name})
-    add_test (
-      NAME ${UNIT_TEST}
-      COMMAND ${CMAKE_COMMAND} -E env "LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/lib:$ENV{LD_LIBRARY_PATH}" ${Python_EXECUTABLE} -c "import ${name}"
-      )
-
-    add_custom_command(
-      TARGET ${name}
-      COMMENT "Running Python import test on ${name}"
-      POST_BUILD
-      WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-      COMMAND ${CMAKE_COMMAND} -E env "LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/lib:$ENV{LD_LIBRARY_PATH}" ${Python_EXECUTABLE} -c "import ${name}"
-      )
-  else ()
-    # This code emits the warning once
-    get_property(prop_defined GLOBAL PROPERTY GNU_F2PY_WARNING_EMITTED DEFINED)
-    if (NOT prop_defined)
-      ecbuild_warn("There are currently issues with GNU and f2py from Conda that prevent running tests")
-      define_property(GLOBAL PROPERTY GNU_F2PY_WARNING_EMITTED BRIEF_DOCS "GNU-f2py" FULL_DOCS "GNU-f2py")
-    endif ()
-  endif ()
+  set(UNIT_TEST test_${name})
+  add_test (
+    NAME ${UNIT_TEST}
+    COMMAND ${CMAKE_COMMAND} -E env "LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/lib:$ENV{LD_LIBRARY_PATH}" ${Python_EXECUTABLE} -c "import ${name}"
+    )
+
+  add_custom_command(
+    TARGET ${name}
+    COMMENT "Running Python import test on ${name}"
+    POST_BUILD
+    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+    COMMAND ${CMAKE_COMMAND} -E env "LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/lib:$ENV{LD_LIBRARY_PATH}" ${Python_EXECUTABLE} -c "import ${name}"
+    )
 
 endmacro ()
@@ -11,13 +11,21 @@ macro (try_f2py_compile file var)
    set( _f2py_check_bindir "${CMAKE_BINARY_DIR}/f2py_tmp")
    file(MAKE_DIRECTORY ${_f2py_check_bindir})
 
+   # We need to work around a meson bug with ifort and stderr output
+   # Once we fully move to use ifx this can be removed
+   if (IFORT_HAS_DEPRECATION_WARNING)
+     message(STATUS "Using workaround for ifort with deprecation message")
+     set(MESON_F2PY_FCOMPILER "ifort -diag-disable=10448")
+   else ()
+     set(MESON_F2PY_FCOMPILER "${CMAKE_Fortran_COMPILER}")
+   endif ()
    execute_process(
-      COMMAND ${F2PY_EXECUTABLE} -m test_ -c ${file} --fcompiler=${F2PY_FCOMPILER}
-      WORKING_DIRECTORY ${_f2py_check_bindir}
-      RESULT_VARIABLE result
-      OUTPUT_QUIET
-      ERROR_QUIET
-      )
+     COMMAND cmake -E env "FC=${MESON_F2PY_COMPILER}" ${F2PY_EXECUTABLE} -m test_ -c ${file} --fcompiler=${F2PY_FCOMPILER}
+     WORKING_DIRECTORY ${_f2py_check_bindir}
+     RESULT_VARIABLE result
+     OUTPUT_QUIET
+     ERROR_QUIET
+     )
 
    if (result EQUAL 0)
       file(GLOB F2PY_TEST_OUTPUT_FILE ${_f2py_check_bindir}/*.so)

@@ -32,22 +32,31 @@
 
 # Path to the f2py3 executable
 find_program(F2PY3_EXECUTABLE NAMES "f2py${Python3_VERSION_MAJOR}.${Python3_VERSION_MINOR}"
-                                   "f2py-${Python3_VERSION_MAJOR}.${Python3_VERSION_MINOR}"
-                                   "f2py${Python3_VERSION_MAJOR}"
-                                   "f2py"
-                                   )
+                                    "f2py-${Python3_VERSION_MAJOR}.${Python3_VERSION_MINOR}"
+                                    "f2py${Python3_VERSION_MAJOR}"
+                                    "f2py"
+                                    )
 
 if(F2PY3_EXECUTABLE)
    # extract the version string
    execute_process(COMMAND "${F2PY3_EXECUTABLE}" -v
-                     OUTPUT_VARIABLE F2PY3_VERSION_STRING
-                     OUTPUT_STRIP_TRAILING_WHITESPACE)
+                   OUTPUT_VARIABLE F2PY3_VERSION_STRING
+                   OUTPUT_STRIP_TRAILING_WHITESPACE)
    if("${F2PY3_VERSION_STRING}" MATCHES "^([0-9]+)(.([0-9+]))?(.([0-9+]))?$")
       set(F2PY3_VERSION_MAJOR "${CMAKE_MATCH_1}")
       set(F2PY3_VERSION_MINOR "${CMAKE_MATCH_3}")
       set(F2PY3_VERSION_PATCH "${CMAKE_MATCH_5}")
    endif()
 
+   # Testing has shown that f2py3 with Python 3.12+ needs to set
+   # a new CMake policy, CMP0132, because f2py3 uses Meson in the
+   # instead of distutils.
+   # See https://github.com/mesonbuild/meson/issues/13882
+   if (Python3_VERSION_MINOR GREATER_EQUAL 12)
+     message(STATUS "[F2PY3]: Setting CMP0132 policy to NEW")
+     cmake_policy(SET CMP0132 NEW)
+   endif ()
+
    # Get the compiler-id and map it to compiler vendor as used by f2py3.
    # Currently, we only check for GNU, but this can easily be extended.
    # Cache the result, so that we only need to check once.