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add new chapter
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ahasverus committed Jul 26, 2024
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1 change: 1 addition & 0 deletions _quarto.yml
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Expand Up @@ -36,6 +36,7 @@ book:
- chapters/working-with-docker.qmd
- chapters/parallel-computing.qmd
appendices:
- chapters/administration.qmd
- chapters/linux-cheatsheet.qmd

sidebar:
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# System administration

Coming soon...
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Expand Up @@ -44,14 +44,14 @@ that you can launch jobs whenever you want. However you are invited to respect s

## Storage

You have access to four personal directories:
As a regular user, you have access to four personal directories:

- `/home/you/`
- `/media/sancho/you/` (external drive)
- `/media/seagate/you/` (external drive)
- `/media/cervantes/you/` (external drive)

You can create, edit, rename and remove any files/directories you want inside these directories.
Inside these directories, you can create, edit, rename and remove any files/directories you want.

::: {.callout-important}
## Important
Expand All @@ -60,7 +60,7 @@ Rossinante is **not a storage server**. The 30 TB storage are shared
among all users. You can store large datasets to run yours
analyses, but once you're done, please remove these files.

**There is no backup system!** You are responsible for your data.
**There is no backup system!** You are responsible for your own data.
:::


Expand All @@ -71,6 +71,7 @@ analyses, but once you're done, please remove these files.
- [`RStudio Server`](https://www.rstudio.com/products/rstudio/download-server/) -- Web interface for R
- [`Python 3`](https://www.python.org/) -- Scientific computing (among others)
- [`pip3`](https://pip.pypa.io/) -- Python packages managers
- [`venv`](https://docs.python.org/3/library/venv.html) -- Python virtual environments
- [`Pandoc`](https://pandoc.org/) -- Universal document converter
- [`Quarto`](https://quarto.org/) -- Scientific publishing system
- [`git`](https://git-scm.com/) -- Version control system
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If you need to use a non-installed software, please contact the administrator.

Note that each user has a personal R library in which he/she can install every
R packages he/she wants (independently of other users). For Python, packages are
shared among all users (except if you work with virtual environments **[recommended]**).
::: {.callout-note}
## Note on R packages

Each user has a personal R library in which he/she can install every
R packages he/she wants (independently of other users).

For Python, packages are shared among all users except if you work with virtual environments (**recommended**).
:::

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