update authors & citation

FRBCesab · Sep 18, 2024 · cefccd3 · cefccd3
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diff --git a/CITATION.cff b/CITATION.cff
@@ -19,16 +19,33 @@ authors:
   orcid: https://orcid.org/0000-0002-5537-5294
 - family-names: Greco
   given-names: Mattia
-  email: [email protected]
+  email: [email protected]
   orcid: https://orcid.org/0000-0003-2416-6235
+- family-names: Chaabane
+  given-names: Sonia
+  email: [email protected]
+  orcid: https://orcid.org/0000-0002-4653-8610
 - family-names: Giraud
   given-names: Xavier
   email: [email protected]
   orcid: https://orcid.org/0000-0001-5067-8176
-- family-names: Chaabane
-  given-names: Sonia
-  email: [email protected]
-  orcid: https://orcid.org/0000-0002-4653-8610
+- family-names: Garidel-Thoron
+  given-names: Thibault
+  name-particle: de
+  email: [email protected]
+  orcid: https://orcid.org/0000-0001-8983-9571
+preferred-citation:
+  type: manual
+  title: 'forcis: An R client to access the FORCIS database'
+  authors:
+  - name: Casajus Nicolas
+  - name: Greco Mattia
+  - name: Chaabane Sonia
+  - name: Giraud Xavier
+  - name: de Garidel-Thoron Thibault
+  year: '2024'
+  notes: R package version 0.0.0.9000
+  url: https://frbcesab.github.io/forcis
 repository-code: https://github.com/FRBCesab/forcis
 url: https://frbcesab.github.io/forcis
 contact:
@@ -37,6 +54,62 @@ contact:
   email: [email protected]
   orcid: https://orcid.org/0000-0002-5537-5294
 references:
+- type: article
+  title: 'The FORCIS database: A global census of planktonic Foraminifera from ocean
+    waters'
+  authors:
+  - name: Chaabane Sonia
+  - name: De Garidel-Thoron Thibault
+  - name: Giraud Xavier
+  - name: Schiebel Ralf
+  - name: Beaugrand Gregory
+  - name: Brummer Geert-Jan
+  - name: Casajus Nicolas
+  - name: Greco Mattia
+  - name: Grigoratou Maria
+  - name: Howa Hélène
+  - name: Jonkers Lukas
+  - name: Kucera Michal
+  - name: Kuroyanagi Azumi
+  - name: Meilland Julie
+  - name: Monteiro Fanny
+  - name: Mortyn Graham
+  - name: Almogi-Labin Ahuva
+  - name: Asahi Hirofumi
+  - name: Avnaim-Katav Simona
+  - name: Bassinot Franck
+  - name: Davis Catherine V.
+  - name: Field David B.
+  - name: Hernández-Almeida Iván
+  - name: Herut Barak
+  - name: Hosie Graham
+  - name: Howard Will
+  - name: Jentzen Anna
+  - name: Johns David G.
+  - name: Keigwin Lloyd
+  - name: Kitchener John
+  - name: Kohfeld Karen E.
+  - name: Lessa Douglas V. O.
+  - name: Manno Clara
+  - name: Marchant Margarita
+  - name: Ofstad Siri
+  - name: Ortiz Joseph D.
+  - name: Post Alexandra
+  - name: Rigual-Hernandez Andres
+  - name: Rillo Marina C.
+  - name: Robinson Karen
+  - name: Sagawa Takuya
+  - name: Sierro Francisco
+  - name: Takahashi Kunio T.
+  - name: Torfstein Adi
+  - name: Venancio Igor
+  - name: Yamasaki Makoto
+  - name: Ziveri Patrizia
+  journal: Scientific Data
+  volume: '10'
+  doi: 10.1038/s41597-023-02264-2
+  year: '2023'
+  start: '354'
 - type: software
   title: 'R: A Language and Environment for Statistical Computing'
   notes: Depends
@@ -72,6 +145,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0003-4777-038X
   year: '2024'
+  doi: 10.32614/CRAN.package.dplyr
 - type: software
   title: ggplot2
   abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
@@ -111,6 +185,7 @@ references:
     name-particle: van den
     orcid: https://orcid.org/0000-0002-9335-7468
   year: '2024'
+  doi: 10.32614/CRAN.package.ggplot2
 - type: software
   title: jsonlite
   abstract: 'jsonlite: A Simple and Robust JSON Parser and Generator for R'
@@ -123,6 +198,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0002-4035-0289
   year: '2024'
+  doi: 10.32614/CRAN.package.jsonlite
 - type: software
   title: rlang
   abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
@@ -137,6 +213,7 @@ references:
     given-names: Hadley
     email: [email protected]
   year: '2024'
+  doi: 10.32614/CRAN.package.rlang
 - type: software
   title: sf
   abstract: 'sf: Simple Features for R'
@@ -149,6 +226,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0001-8049-7069
   year: '2024'
+  doi: 10.32614/CRAN.package.sf
 - type: software
   title: tidyr
   abstract: 'tidyr: Tidy Messy Data'
@@ -165,6 +243,7 @@ references:
   - family-names: Girlich
     given-names: Maximilian
   year: '2024'
+  doi: 10.32614/CRAN.package.tidyr
 - type: software
   title: utils
   abstract: 'R: A Language and Environment for Statistical Computing'
@@ -194,6 +273,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0002-6983-2759
   year: '2024'
+  doi: 10.32614/CRAN.package.vroom
 - type: software
   title: fs
   abstract: 'fs: Cross-Platform File System Operations Based on ''libuv'''
@@ -210,6 +290,7 @@ references:
     given-names: Gábor
     email: [email protected]
   year: '2024'
+  doi: 10.32614/CRAN.package.fs
 - type: software
   title: knitr
   abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
@@ -222,6 +303,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0003-0645-5666
   year: '2024'
+  doi: 10.32614/CRAN.package.knitr
 - type: software
   title: rmarkdown
   abstract: 'rmarkdown: Dynamic Documents for R'
@@ -265,6 +347,7 @@ references:
     email: [email protected]
     orcid: https://orcid.org/0000-0003-3925-190X
   year: '2024'
+  doi: 10.32614/CRAN.package.rmarkdown
 - type: software
   title: testthat
   abstract: 'testthat: Unit Testing for R'
@@ -276,6 +359,7 @@ references:
     given-names: Hadley
     email: [email protected]
   year: '2024'
+  doi: 10.32614/CRAN.package.testthat
   version: '>= 3.0.0'
 - type: software
   title: withr
@@ -301,4 +385,5 @@ references:
   - family-names: Chang
     given-names: Winston
   year: '2024'
+  doi: 10.32614/CRAN.package.withr
 
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -11,18 +11,23 @@ Authors@R: c(
     person(given   = "Mattia",
            family  = "Greco",
            role    = "aut",
-           email   = "[email protected]",
+           email   = "[email protected]",
            comment = c(ORCID = "0000-0003-2416-6235")),
+    person(given   = "Sonia",
+           family  = "Chaabane",
+           role    = "aut",
+           email   = "[email protected]",
+           comment = c(ORCID = "0000-0002-4653-8610")),
     person(given   = "Xavier",
            family  = "Giraud",
            role    = "aut",
            email   = "[email protected]",
            comment = c(ORCID = "0000-0001-5067-8176")),
-    person(given   = "Sonia",
-           family  = "Chaabane",
+    person(given   = "Thibault",
+           family  = "de Garidel-Thoron",
            role    = "aut",
-           email   = "sonia.chaabane@fondationbiodiversite.fr",
-           comment = c(ORCID = "0000-0002-4653-8610")))
+           email   = "garidel@cerege.fr",
+           comment = c(ORCID = "0000-0001-8983-9571")))
 Description: Provides an interface to the FORCIS database 
     (<https://zenodo.org/doi/10.5281/zenodo.7390791>) on global foraminifera
     distribution. This package allows to download and to handle FORCIS data.

diff --git a/README.Rmd b/README.Rmd
@@ -106,7 +106,7 @@ For an overview of the main features of `forcis`, please read the [Get started](
 
 Please cite this package as: 
 
-> Casajus N, Greco M, Giraud X & Chaabane S (2024) forcis: An R client to access the FORCIS database. R package version 0.0.0.9000. URL: https://frbcesab.github.io/forcis/.
+> Casajus N, Greco M, Chaabane S, Giraud X & de Garidel-Thoron T (2024) forcis: An R client to access the FORCIS database. R package version 0.0.0.9000. URL: https://frbcesab.github.io/forcis/.
 
 You can also run:
 

diff --git a/README.md b/README.md
@@ -106,9 +106,9 @@ vignette.
 
 Please cite this package as:
 
-> Casajus N, Greco M, Giraud X & Chaabane S (2024) forcis: An R client
-> to access the FORCIS database. R package version 0.0.0.9000. URL:
-> <https://frbcesab.github.io/forcis/>.
+> Casajus N, Greco M, Chaabane S, Giraud X & de Garidel-Thoron T (2024)
+> forcis: An R client to access the FORCIS database. R package version
+> 0.0.0.9000. URL: <https://frbcesab.github.io/forcis/>.
 
 You can also run:
 

diff --git a/codemeta.json b/codemeta.json
@@ -2,7 +2,7 @@
   "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
   "@type": "SoftwareSourceCode",
   "identifier": "forcis",
-  "description": "Provides an interface to the FORCIS database on global foraminifera distribution. This package allows to download and to handle FORCIS data. It is part of the FRB-CESAB working group FORCIS. <https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/forcis/>.",
+  "description": "Provides an interface to the FORCIS database (<https://zenodo.org/doi/10.5281/zenodo.7390791>) on global foraminifera distribution. This package allows to download and to handle FORCIS data. It is part of the FRB-CESAB working group FORCIS. <https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/forcis/>.",
   "name": "forcis: An R Client to Access the FORCIS Database",
   "codeRepository": "https://github.com/frbcesab/forcis",
   "issueTracker": "https://github.com/FRBCesab/forcis/issues",
@@ -13,7 +13,7 @@
     "name": "R",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 4.3.2 (2023-10-31 ucrt)",
+  "runtimePlatform": "R version 4.4.1 (2024-06-14)",
   "author": [
     {
       "@type": "Person",
@@ -26,9 +26,16 @@
       "@type": "Person",
       "givenName": "Mattia",
       "familyName": "Greco",
-      "email": "[email protected]",
+      "email": "[email protected]",
       "@id": "https://orcid.org/0000-0003-2416-6235"
     },
+    {
+      "@type": "Person",
+      "givenName": "Sonia",
+      "familyName": "Chaabane",
+      "email": "[email protected]",
+      "@id": "https://orcid.org/0000-0002-4653-8610"
+    },
     {
       "@type": "Person",
       "givenName": "Xavier",
@@ -38,10 +45,10 @@
     },
     {
       "@type": "Person",
-      "givenName": "Sonia",
-      "familyName": "Chaabane",
-      "email": "sonia.chaabane@fondationbiodiversite.fr",
-      "@id": "https://orcid.org/0000-0002-4653-8610"
+      "givenName": "Thibault",
+      "familyName": "de Garidel-Thoron",
+      "email": "garidel@cerege.fr",
+      "@id": "https://orcid.org/0000-0001-8983-9571"
     }
   ],
   "copyrightHolder": [
@@ -223,7 +230,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "1069.832KB",
+  "fileSize": "2712.736KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -237,13 +244,17 @@
           "@type": "Organization",
           "name": "Greco Mattia"
         },
+        {
+          "@type": "Organization",
+          "name": "Chaabane Sonia"
+        },
         {
           "@type": "Organization",
           "name": "Giraud Xavier"
         },
         {
           "@type": "Organization",
-          "name": "Chaabane Sonia"
+          "name": "de Garidel-Thoron Thibault"
         }
       ],
       "name": "forcis: {An} {R} client to access the {FORCIS} database",

diff --git a/inst/CITATION b/inst/CITATION
@@ -13,8 +13,9 @@ bibentry(
   title   = "forcis: {An} {R} client to access the {FORCIS} database",
   author  = c(person("Casajus Nicolas"), 
               person("Greco Mattia"), 
+              person("Chaabane Sonia"),
               person("Giraud Xavier"), 
-              person("Chaabane Sonia")),
+              person("de Garidel-Thoron Thibault")),
   year    = year,
   note    = note,
   url     = "https://frbcesab.github.io/forcis",
@@ -77,4 +78,4 @@ bibentry(
   doi     = "10.1038/s41597-023-02264-2",
   year    = "2023",
   header  = "To cite the FORCIS database in publications use:"
-)
+)
diff --git a/man/forcis-package.Rd b/man/forcis-package.Rd