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LICENSE
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HMMER - Biological sequence analysis with profile hidden Markov models
Copyright (C) 1992-2023 Sean R. Eddy
Copyright (C) 2015-2023 President and Fellows of Harvard College
Copyright (C) 2000-2023 Howard Hughes Medical Institute
Copyright (C) 1995-2006 Washington University School of Medicine
Copyright (C) 1992-1995 MRC Laboratory of Molecular Biology
-----------------------------------------------------------------------
The code includes contributions and input from current and past
members of the HMMER development team, as well as other colleagues and
sources, including:
Bill Arndt
Jeremy Buhler
Tyler Camp
Nick Carter
Sergi Castellano
Goran Ceric
Michael Farrar
Rob Finn
Ian Holmes
Bjarne Knudsen
Diana Kolbe
Martin Larralde
Erik Lindahl
Graeme Mitchison
Eric Nawrocki
Lee Newberg
Sam Petti
Elena Rivas
Walt Shands
Travis Wheeler
HMMER also includes copyrighted and licensed code that has been
incorporated from other sources, including:
Yuta Mori (libdivsufsort-lite)
Apple Computer
Free Software Foundation, Inc.
IBM TJ Watson Research Center
X Consortium
HMMER uses the Easel software library, which has its own license and
copyright information. See easel/LICENSE.
HMMER includes patent-pending SIMD technology under a nonexclusive
license from the estate of Michael Farrar. You are sublicensed to use
this technology specifically for the use, modification, and
redistribution of HMMER.
HMMER development is supported in part by the National Human Genome
Research Institute of the US National Institutes of Health under grant
number R01HG009116. The content is solely the responsibility of the
authors and does not necessarily represent the official views of the
National Institutes of Health.
HMMER source code is distributed as open source under the terms of the
BSD three-clause license:
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials provided
with the distribution.
3. Neither the name of any copyright holder nor the names of
contributors may be used to endorse or promote products derived
from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
OF THE POSSIBILITY OF SUCH DAMAGE.