Workflow to identify MS2 from a PRIDE dataset with the Comet identification engine

please see ECP-PRIDE-proteomicsworkflows.github.io on information how add this workflow to your ECP account.

• "PRIDE_PXD" : accession number of the dataset to be processed; please see ECP-PRIDE-proteomicsworkflows.github.io on which accessions are available - default PXD001109
• "ORGANISM_DB" : human / mouse (standard UniProt sequence database) - default human
• "TOLERANCE_PPM" : mass tolerance in ppm - default 10
• "FDR_LEVEL" : percentage acceptable FDR (integer) - default 5 (%)