run-testdataset.yml

name: Run testdata set on supported python versions

on:
  push:
    branches: [ main, develop ]
  pull_request:
    branches: [ main ]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]

    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{matrix.python-version}}
    - name: Install poetry
      uses: Gr1N/setup-poetry@v9
    - name: Install dependencies and package
      run: |
        poetry lock
        poetry show --tree
        poetry install
    - name: Run testdataset in test_data
      run: |
        poetry run edgehog --hog test_data/FastOMA_HOGs.orthoxml \
                --species_tree test_data/species_tree.nwk \
                --gff_directory test_data/gff3/ \
                --date_edges \
                --output_directory test-results

    - name: check produced results
      run: |
        ls test-results
        gunzip -c test-results/12_linearized_synteny_graph_edges.tsv.gz | head -n 10