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@DNA-and-Natural-Algorithms-Group

DNA and Natural Algorithms Group

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  1. piperine piperine Public

    Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    Python 21 6

  2. multistrand multistrand Public

    Multistrand nucleic acid kinetic simulator

    C++ 17 10

  3. peppercornenumerator peppercornenumerator Public

    domain-level nucleic acid reaction enumeration

    Python 10 6

  4. KinDA KinDA Public

    Kinetic DNA strand displacement analyzer

    Python 10 5

  5. nuskell nuskell Public

    Nucleic acid strand displacement compiler

    Python 8 3

  6. SST-sequence-designer SST-sequence-designer Public

    Sequence designer for single-stranded DNA tiles

    Python 6 4

Repositories

Showing 10 of 16 repositories
  • stickydesign Public

    A package for designing short orthogonal and isoenergetic DNA sequences, intended for DNA tile sticky ends and often used for toeholds.

    DNA-and-Natural-Algorithms-Group/stickydesign’s past year of commit activity
    Python 2 3 1 0 Updated Oct 30, 2024
  • multistrand Public

    Multistrand nucleic acid kinetic simulator

    DNA-and-Natural-Algorithms-Group/multistrand’s past year of commit activity
    C++ 17 10 0 1 Updated Aug 28, 2024
  • alhambra Public

    A package for designing and working with algorithmic DNA tile systems.

    DNA-and-Natural-Algorithms-Group/alhambra’s past year of commit activity
    Python 0 3 4 4 Updated Jun 29, 2024
  • xgrow Public

    Simulator package for algorithmic tile self-assembly models aTAM and kTAM, as a python package.

    DNA-and-Natural-Algorithms-Group/xgrow’s past year of commit activity
    C 3 4 2 0 Updated May 8, 2024
  • KinDA Public

    Kinetic DNA strand displacement analyzer

    DNA-and-Natural-Algorithms-Group/KinDA’s past year of commit activity
    Python 10 5 0 1 Updated Apr 29, 2024
  • peppercompiler Public

    A compiler for DNA circuits and tile systems.

    DNA-and-Natural-Algorithms-Group/peppercompiler’s past year of commit activity
    Python 2 MIT 3 0 1 Updated Dec 13, 2023
  • piperine Public

    Piperine compiles abstract CRNs into DNA sequences and estimates how much the generated DNA implementations may participate in undesired DNA-DNA interactions during experiments.

    DNA-and-Natural-Algorithms-Group/piperine’s past year of commit activity
    Python 21 MIT 6 1 1 Updated Dec 13, 2023
  • SST-sequence-designer Public

    Sequence designer for single-stranded DNA tiles

    DNA-and-Natural-Algorithms-Group/SST-sequence-designer’s past year of commit activity
    Python 6 4 2 0 Updated Oct 26, 2023
  • peppercornenumerator Public

    domain-level nucleic acid reaction enumeration

    DNA-and-Natural-Algorithms-Group/peppercornenumerator’s past year of commit activity
    Python 10 MIT 6 0 0 Updated Aug 23, 2023
  • nuskell Public

    Nucleic acid strand displacement compiler

    DNA-and-Natural-Algorithms-Group/nuskell’s past year of commit activity
    Python 8 MIT 3 0 1 Updated Jul 25, 2023
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