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Add examples
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André Böni
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Feb 13, 2024
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import os | ||
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from gaitalytics import api | ||
from gaitalytics import utils | ||
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def main(): | ||
settings_file = "settings/hbm_pig.yaml" | ||
buffered_path = "./raw" | ||
out_path = "./spatio_temp" | ||
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configs = utils.ConfigProvider(settings_file) | ||
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loaded_cycles = api.extract_cycles_buffered(buffered_path, configs) | ||
cycle_data = loaded_cycles.get_raw_cycle_points() | ||
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results = api.analyse_data(cycle_data, configs) | ||
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if not os.path.exists(out_path): | ||
os.mkdir(out_path) | ||
results.to_csv(f"{out_path}/spatio_temp.csv") | ||
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if __name__ == "__main__": | ||
main() |
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from gaitalytics import api | ||
from gaitalytics import utils | ||
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def main(): | ||
settings_file = "settings/hbm_pig.yaml" | ||
file_path = "./test/data/Baseline.3.c3d" | ||
out_path = "./test/data/" | ||
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# load configs | ||
configs = utils.ConfigProvider(settings_file) | ||
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api.detect_gait_events(file_path, out_path, configs, show_plot=False) | ||
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if __name__ == "__main__": | ||
main() |
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import os | ||
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from gaitalytics import api | ||
from gaitalytics import utils | ||
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def main(): | ||
settings_file = "settings/hbm_pig.yaml" | ||
file_path = "./test/data/Baseline.5.c3d" | ||
buffered_path_raw = "./raw" | ||
buffered_path_norm = "./norm" | ||
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configs = utils.ConfigProvider(settings_file) | ||
if not os.path.exists(buffered_path_raw): | ||
os.mkdir(buffered_path_raw) | ||
cycle_data = api.extract_cycles(file_path, configs, buffer_output_path=buffered_path_raw) | ||
else: | ||
cycle_data = api.extract_cycles_buffered(buffered_path_raw, configs).get_raw_cycle_points() | ||
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if not os.path.exists(buffered_path_norm): | ||
os.mkdir(buffered_path_norm) | ||
api.normalise_cycles(file_path, cycle_data, buffer_output_path=buffered_path_norm) | ||
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# __name__ | ||
if __name__ == "__main__": | ||
main() |
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from gaitalytics import utils, api | ||
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def main(): | ||
settings_file = "settings/hbm_pig.yaml" | ||
file_path = "./tests/data/Baseline.4.c3d" | ||
out_path = "./tests/data/" | ||
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# load configs | ||
configs = utils.ConfigProvider(settings_file) | ||
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api.model_data(file_path, out_path, configs, methode=api.MODELLING_CMOS, belt_speed=0.8, dominant_leg_length=998) | ||
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if __name__ == "__main__": | ||
main() |
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from gaitalytics import emg, files | ||
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# This is an example pipeline # | ||
############################### | ||
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# Define paths | ||
DATA_PATH = "test/data/" | ||
TEST_ORIGIN_FILE_NAME = "1min_emg_walk.c3d" | ||
SETTINGS_PATH = "settings/" | ||
SETTINGS_FILE = "CGM2_5-pyCGM2.settings" | ||
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def main(): | ||
acq_trial = c3d.read_btk(f"{DATA_PATH}{TEST_ORIGIN_FILE_NAME}") | ||
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# Instanciate EMGCoherenceAnalysis objects | ||
coh_left = emg.EMGCoherenceAnalysis(1, 2, "Left") # Verify if good channel indexs | ||
coh_right = emg.EMGCoherenceAnalysis(3, 4, "Right") # Verify if good channel indexs | ||
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# Results stored in a tuple of frequencies and coherences | ||
coherence_result_left = coh_left.calculate_coherence(acq_trial) | ||
coherence_result_right = coh_right.calculate_coherence(acq_trial) | ||
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# Using the special variable | ||
# __name__ | ||
if __name__ == "__main__": | ||
main() |
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# Environment: Motek Caren | ||
# Marker set: HBM2 Lower Body Trunk | ||
# Modelling: PIG | ||
environment_setting: | ||
progression_axes: y | ||
progression_values: negativ | ||
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marker_set_mapping: | ||
left_back_hip: LASIS | ||
right_back_hip: RASIS | ||
left_front_hip: LPSIS | ||
right_front_hip: RPSIS | ||
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left_lat_upper_leg: LLTHI | ||
right_lat_upper_leg: RLTHI | ||
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left_lat_knee: LLEK | ||
right_lat_knee: RLEK | ||
left_med_knee: LMEK | ||
right_med_knee: RMEK | ||
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left_lat_lower_leg: LLSHA | ||
right_lat_lower_leg: RLSHA | ||
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left_lat_malleoli: LLM | ||
right_lat_malleoli: RLM | ||
left_med_malleoli: LMM | ||
right_med_malleoli: RMM | ||
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right_heel: RHEE | ||
left_heel: LHEE | ||
right_meta_2: RMT2 | ||
left_meta_2: LMT2 | ||
right_meta_5: RMT5 | ||
left_meta_5: LMT5 | ||
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neck: C7 | ||
back: T10 | ||
jugularis: JN | ||
xyphoideus: XIPH | ||
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# Additional markers which will be modelled in modelling.py | ||
com: COM | ||
xcom: XCOM | ||
cmos: CMOS | ||
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model_mapping: | ||
#Angles | ||
left_thorax_angles: LThoraxAngles | ||
right_thorax_angles: RThoraxAngles | ||
left_spine_angles: LSpineAngles | ||
right_spine_angles: RSpineAngles | ||
left_pelvis_angles: LPelvisAngles | ||
right_pelvis_angles: RPelvisAngles | ||
left_foot_progression_angles: LFootProgressAngles | ||
right_foot_progression_angles: RFootProgressAngles | ||
left_hip_angles: LHipAngles | ||
right_hip_angles: RHipAngles | ||
left_knee_angles: LKneeAngles | ||
right_knee_angles: RKneeAngles | ||
left_ankle_angles: LAnkleAngles | ||
right_ankle_angles: RAnkleAngles | ||
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#Forces | ||
left_GRF: LGroundReactionForce | ||
right_GRF: RGroundReactionForce | ||
left_nGRF: LNormalisedGRF | ||
right_nGRF: RNormalisedGRF | ||
left_waist_force: LWaistForce | ||
right_waist_force: RWaistForce | ||
left_hip_force: LHipForce | ||
right_hip_force: RHipForce | ||
left_knee_force: LKneeForce | ||
right_knee_force: RKneeForce | ||
left_ankle_force: LAnkleForce | ||
right_ankle_force: RAnkleForce | ||
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#Moments | ||
left_GRM: LGroundReactionMoment | ||
right_GRM: RGroundReactionMoment | ||
left_waist_moment: LWaistMoment | ||
right_waist_moment: RWaistMoment | ||
left_hip_moment: LHipMoment | ||
right_hip_moment: RHipMoment | ||
left_knee_moment: LKneeMoment | ||
right_knee_moment: RKneeMoment | ||
left_ankle_moment: LAnkleMoment | ||
right_ankle_moment: RAnkleMoment | ||
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#Powers | ||
left_waist_power: LWaistPower | ||
right_waist_power: RWaistPower | ||
left_hip_power: LHipPower | ||
right_hip_power: RHipPower | ||
left_knee_power: LKneePower | ||
right_knee_power: RKneePower | ||
left_ankle_power: LAnklePower | ||
right_ankle_power: RAnklePower | ||
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