updt docs

CostaLab · Dec 13, 2023 · 5449bf1 · 5449bf1
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -2,8 +2,8 @@ Type: Package
 Package: CimpleG
 Title: CimpleG - Individual/Single CpG sites For Classification and
     Deconvolution
-Version: 0.0.5.9023
-Date: 2023-12-12
+Version: 0.0.5.9024
+Date: 2023-12-13
 Authors@R:
     person("Tiago", "F.V. Maié", , "[email protected]", role = c("aut", "cre"))
 Maintainer: Tiago Maié <[email protected]>

diff --git a/README.Rmd b/README.Rmd
@@ -18,7 +18,8 @@ knitr::opts_chunk$set(
 
 CimpleG, an R package to find (small) CpG signatures.
 
-`r badger::badge_github_actions()`
+`r badger::badge_github_actions("CostaLab/CimpleG")`
+`r badger::badge_devel("CostaLab/CimpleG", "green")`
 `r badger::badge_doi("10.1186/s13059-023-03000-0", "blue")`
 
 ## Installation

diff --git a/README.md b/README.md
@@ -9,6 +9,7 @@ CimpleG, an R package to find (small) CpG signatures.
 
 [![R build
 status](https://github.com/CostaLab/CimpleG/workflows/R-CMD-check/badge.svg)](https://github.com/CostaLab/CimpleG/actions)
+[![](https://img.shields.io/badge/devel%20version-0.0.5.9024-green.svg)](https://github.com/CostaLab/CimpleG)
 [![](https://img.shields.io/badge/doi-10.1186/s13059--023--03000--0-blue.svg)](https://doi.org/10.1186/s13059-023-03000-0)
 
 ## Installation
@@ -186,10 +187,10 @@ cimpleg_hyper <- CimpleG(
     "fibroblasts"
   )
 )
-#> Training for target 'neurons' with 'CimpleG' has finished.: 0.448 sec elapsed
-#> Training for target 'glia' with 'CimpleG' has finished.: 0.518 sec elapsed
-#> Training for target 'blood_cells' with 'CimpleG' has finished.: 0.571 sec elapsed
-#> Training for target 'fibroblasts' with 'CimpleG' has finished.: 0.689 sec elapsed
+#> Training for target 'neurons' with 'CimpleG' has finished.: 0.407 sec elapsed
+#> Training for target 'glia' with 'CimpleG' has finished.: 0.55 sec elapsed
+#> Training for target 'blood_cells' with 'CimpleG' has finished.: 0.373 sec elapsed
+#> Training for target 'fibroblasts' with 'CimpleG' has finished.: 0.514 sec elapsed
 
 deconv_hyper <- run_deconvolution(
   cpg_obj = cimpleg_hyper,
@@ -212,10 +213,10 @@ cimpleg_3sigs <- CimpleG(
     "fibroblasts"
   )
 )
-#> Training for target 'neurons' with 'CimpleG' has finished.: 0.67 sec elapsed
-#> Training for target 'glia' with 'CimpleG' has finished.: 0.433 sec elapsed
-#> Training for target 'blood_cells' with 'CimpleG' has finished.: 0.452 sec elapsed
-#> Training for target 'fibroblasts' with 'CimpleG' has finished.: 0.433 sec elapsed
+#> Training for target 'neurons' with 'CimpleG' has finished.: 0.611 sec elapsed
+#> Training for target 'glia' with 'CimpleG' has finished.: 0.614 sec elapsed
+#> Training for target 'blood_cells' with 'CimpleG' has finished.: 0.703 sec elapsed
+#> Training for target 'fibroblasts' with 'CimpleG' has finished.: 0.431 sec elapsed
 
 deconv_3sigs <- run_deconvolution(
   cpg_obj = cimpleg_3sigs,

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -4,7 +4,7 @@ pkgdown_sha: ~
 articles:
   generate-signatures: generate-signatures.html
   save_load_objects: save_load_objects.html
-last_built: 2023-12-12T15:12Z
+last_built: 2023-12-13T11:14Z
 urls:
   reference: https://costalab.github.io/CimpleG/reference
   article: https://costalab.github.io/CimpleG/articles

diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/search.json b/docs/search.json