Early exit

ComputationalPhysiology · Nov 1, 2024 · 0ecc5f4 · 0ecc5f4
1 parent 2c137a9
commit 0ecc5f4
Showing 1 changed file with 46 additions and 44 deletions.
diff --git a/src/cardiac_geometries/geometry.py b/src/cardiac_geometries/geometry.py
@@ -33,16 +33,16 @@ def save(self, path: str | Path) -> None:
         self.mesh.comm.barrier()
         adios4dolfinx.write_mesh(mesh=self.mesh, filename=path)
 
-        # if Version(np.__version__) <= Version("2.11") or Version(adios2.__version__) >= Version(
-        #     "2.10.2"
-        # ):
-        #     # This is broken in adios < 2.10.2 for numpy >= 2.11
-        #     adios4dolfinx.write_attributes(
-        #         comm=self.mesh.comm,
-        #         filename=path,
-        #         name="markers",
-        #         attributes={k: np.array(v, dtype=np.uint8) for k, v in self.markers.items()},
-        #     )
+        if Version(np.__version__) <= Version("2.11") or Version(adios2.__version__) >= Version(
+            "2.10.2"
+        ):
+            # This is broken in adios < 2.10.2 for numpy >= 2.11
+            adios4dolfinx.write_attributes(
+                comm=self.mesh.comm,
+                filename=path,
+                name="markers",
+                attributes={k: np.array(v, dtype=np.uint8) for k, v in self.markers.items()},
+            )
 
         if self.cfun is not None:
             adios4dolfinx.write_meshtags(
@@ -58,41 +58,43 @@ def save(self, path: str | Path) -> None:
                 filename=path,
                 meshtag_name="Facet tags",
             )
-        if self.efun is not None:
-            adios4dolfinx.write_meshtags(
-                meshtags=self.efun,
-                mesh=self.mesh,
-                filename=path,
-                meshtag_name="Edge tags",
-            )
-        if self.vfun is not None:
-            adios4dolfinx.write_meshtags(
-                meshtags=self.vfun,
-                mesh=self.mesh,
-                filename=path,
-                meshtag_name="Vertex tags",
-            )
-
-        if self.f0 is not None:
-            el = self.f0.ufl_element()
-            arr = utils.element2array(el)
-            # if Version(np.__version__) <= Version("2.11") or Version(adios2.__version__) >= Version(
-            #     "2.10.2"
-            # ):
-            #     # This is broken in adios for numpy >= 2.11
-            #     adios4dolfinx.write_attributes(
-            #         comm=self.mesh.comm,
-            #         filename=path,
-            #         name="function_space",
-            #         attributes={k: arr for k in ("f0", "s0", "n0")},
-            #     )
-            adios4dolfinx.write_function(u=self.f0, filename=path, name="f0")
-        if self.s0 is not None:
-            adios4dolfinx.write_function(u=self.s0, filename=path, name="s0")
-        if self.n0 is not None:
-            adios4dolfinx.write_function(u=self.n0, filename=path, name="n0")
+        # if self.efun is not None:
+        #     adios4dolfinx.write_meshtags(
+        #         meshtags=self.efun,
+        #         mesh=self.mesh,
+        #         filename=path,
+        #         meshtag_name="Edge tags",
+        #     )
+        # if self.vfun is not None:
+        #     adios4dolfinx.write_meshtags(
+        #         meshtags=self.vfun,
+        #         mesh=self.mesh,
+        #         filename=path,
+        #         meshtag_name="Vertex tags",
+        #     )
 
-        self.mesh.comm.barrier()
+        # exit()
+        # if self.f0 is not None:
+        #     el = self.f0.ufl_element()
+        #     arr = utils.element2array(el)
+        #     if Version(np.__version__) <= Version("2.11")
+        # or Version(adios2.__version__) >= Version(
+        #         "2.10.2"
+        #     ):
+        #         # This is broken in adios for numpy >= 2.11
+        #         adios4dolfinx.write_attributes(
+        #             comm=self.mesh.comm,
+        #             filename=path,
+        #             name="function_space",
+        #             attributes={k: arr for k in ("f0", "s0", "n0")},
+        #         )
+        #     adios4dolfinx.write_function(u=self.f0, filename=path, name="f0")
+        # if self.s0 is not None:
+        #     adios4dolfinx.write_function(u=self.s0, filename=path, name="s0")
+        # if self.n0 is not None:
+        #     adios4dolfinx.write_function(u=self.n0, filename=path, name="n0")
+
+        # self.mesh.comm.barrier()
 
     @classmethod
     def from_file(cls, comm: MPI.Intracomm, path: str | Path) -> "Geometry":