Update ukb-atlas demo #191
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| name: Test package | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main] | |
| jobs: | |
| test-code: | |
| name: Test on ${{ matrix.container }} | |
| runs-on: ubuntu-24.04 | |
| container: ${{ matrix.container }} | |
| env: | |
| DEB_PYTHON_INSTALL_LAYOUT: deb_system | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| container: [ | |
| "ghcr.io/fenics/dolfinx/dolfinx:stable", | |
| "ghcr.io/fenics/dolfinx/dolfinx:nightly", | |
| ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install package | |
| run: | | |
| python3 -m pip install scifem --no-build-isolation | |
| python3 -m pip install .[test] | |
| - name: Run tests | |
| run: python3 -m pytest -v --cov=cardiac_geometries --cov-report html --cov-report xml --cov-report term-missing | |
| - name: Extract Coverage | |
| run: | | |
| python3 -m coverage report | sed 's/^/ /' >> $GITHUB_STEP_SUMMARY | |
| python3 -m coverage json | |
| export TOTAL=$(python3 -c "import json;print(json.load(open('coverage.json'))['totals']['percent_covered_display'])") | |
| echo "total=$TOTAL" >> $GITHUB_ENV | |
| - name: Upload HTML report. | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ matrix.container == 'ghcr.io/fenics/dolfinx/dolfinx:stable' }} | |
| with: | |
| name: html-report | |
| path: htmlcov |