cactice stands for computing agricultural crop lattices. This repository explores questions about regular spatial arrangements of plant phenotypes (e.g., in a field or greenhouse). For instance:
- How does environmental context influence morphological development?
- What mechanisms underlie spatial patterning?
- Is a given phenotype distribution highly structured or mostly random? In either case, why?
- If structure is evident, can we formalize or predict it? If so, from which (and how much) information?
This repository is exploratory, unstable, and currently very minimal.
Check out the notebooks/explore.ipynb notebook for some examples.
This library makes several assumptions about datasets to which the user must conform:
- Class values are parsed as strings (and mapped internally to integers). Each distinct string is a class, regardless of numeric value: for instance,
9.5and9.5000are considered distinct.