MAINT: update lock files and dev environment

.binder/apt.txt

@@ -0,0 +1 @@
+graphviz

.binder/postBuild

@@ -0,0 +1,12 @@
+#!/bin/bash
+set -ex
+curl -LsSf https://astral.sh/uv/install.sh | sh
+source $HOME/.cargo/env
+uv export \
+  --extra jupyter \
+  --extra notebooks \
+  > requirements.txt
+uv pip install \
+  --requirement requirements.txt \
+  --system
+uv cache clean

.binder/runtime.txt

@@ -0,0 +1 @@
+python-3.10

.github/workflows/cd.yml

@@ -9,9 +9,9 @@ on:
 jobs:
   milestone:
     if: startsWith(github.ref, 'refs/tags')
-    uses: ComPWA/actions/.github/workflows/close-milestone.yml@v1
+    uses: ComPWA/actions/.github/workflows/close-milestone.yml@v2
   package-name:
-    uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v1
+    uses: ComPWA/actions/.github/workflows/get-pypi-name.yml@v2
   pypi:
     environment:
       name: PyPI
@@ -24,9 +24,9 @@ jobs:
       id-token: write
     runs-on: ubuntu-24.04
     steps:
-      - uses: ComPWA/actions/build-pypi-distribution@v1
+      - uses: ComPWA/actions/build-pypi-distribution@v2
       - uses: pypa/gh-action-pypi-publish@release/v1
   push:
     if: startsWith(github.ref, 'refs/tags') && !github.event.release.prerelease
     secrets: inherit
-    uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v1
+    uses: ComPWA/actions/.github/workflows/push-to-version-branches.yml@v2

.github/workflows/ci.yml

@@ -28,7 +28,7 @@ on:
 
 jobs:
   doc:
-    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v1
+    uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2
     permissions:
       pages: write
       id-token: write
@@ -37,7 +37,7 @@ jobs:
       python-version: "3.10"
       specific-pip-packages: ${{ inputs.specific-pip-packages }}
   pytest:
-    uses: ComPWA/actions/.github/workflows/pytest.yml@v1
+    uses: ComPWA/actions/.github/workflows/pytest.yml@v2
     with:
       additional-extras: all
       coverage-target: tensorwaves
@@ -48,6 +48,6 @@ jobs:
     if: inputs.specific-pip-packages == ''
     secrets:
       token: ${{ secrets.PAT }}
-    uses: ComPWA/actions/.github/workflows/pre-commit.yml@v1
+    uses: ComPWA/actions/.github/workflows/pre-commit.yml@v2
     with:
       python-version: "3.10"

.github/workflows/clean-caches.yml

@@ -16,7 +16,7 @@ jobs:
     name: Remove caches
     runs-on: ubuntu-24.04
     steps:
-      - uses: ComPWA/actions/clean-caches@v1
+      - uses: ComPWA/actions/clean-caches@v2
         with:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           ref: ${{ inputs.ref }}

.github/workflows/requirements.yml → .github/workflows/lock.yml

@@ -1,4 +1,4 @@
-name: Requirements
+name: Update
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -12,12 +12,13 @@ on:
       - epic/*
     paths:
       - .pre-commit-config.yaml
+      - uv.lock
   schedule:
     - cron: "0 3 7 */1 *"
   workflow_dispatch:
 
 jobs:
-  requirements:
-    uses: ComPWA/actions/.github/workflows/requirements.yml@v1
+  lock:
+    uses: ComPWA/actions/.github/workflows/lock.yml@v2
     secrets:
       token: ${{ secrets.PAT }}

.github/workflows/pr-linting.yml

@@ -11,4 +11,4 @@ on:
 
 jobs:
   lint-pr:
-    uses: ComPWA/actions/.github/workflows/pr-linting.yml@v1
+    uses: ComPWA/actions/.github/workflows/pr-linting.yml@v2

.pre-commit-config.yaml

@@ -5,25 +5,25 @@ ci:
     - check-jsonschema
     - mypy
     - pyright
+    - uv-lock
 
 repos:
   - repo: meta
     hooks:
       - id: check-hooks-apply
       - id: check-useless-excludes
 
-  - repo: /data/local/redeboer/work/ComPWA/policy
-    rev: 565f235682bdafe8ea5c0d7e88220c95a919a26f
+  - repo: https://github.com/ComPWA/policy
+    rev: 0.5.0rc8
     hooks:
       - id: check-dev-files
         args:
           - --ci-test-extras=all
           - --dev-python-version=3.10
           - --doc-apt-packages=graphviz
-          - --no-prettierrc
-          - --pin-requirements=monthly
           - --repo-name=tensorwaves
           - --repo-title=TensorWaves
+          - --update-lock-files=monthly
       - id: colab-toc-visible
       - id: fix-nbformat-version
       - id: remove-empty-tags
@@ -62,7 +62,7 @@ repos:
             metadata.vscode
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.4
+    rev: v0.6.9
     hooks:
       - id: ruff
         args: [--fix]
@@ -71,7 +71,7 @@ repos:
         types_or: [python, pyi, jupyter]
 
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-ast
       - id: check-case-conflict
@@ -115,7 +115,7 @@ repos:
           - --in-place
 
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.29.2
+    rev: 0.29.4
     hooks:
       - id: check-jsonschema
         name: Check CITATION.cff
@@ -128,7 +128,7 @@ repos:
         pass_filenames: false
 
   - repo: https://github.com/streetsidesoftware/cspell-cli
-    rev: v8.13.3
+    rev: v8.15.1
     hooks:
       - id: cspell
 
@@ -154,11 +154,11 @@ repos:
           - python
 
   - repo: https://github.com/ComPWA/pyright-pre-commit
-    rev: v1.1.379
+    rev: v1.1.384
     hooks:
       - id: pyright
 
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.4.20
+    rev: 0.4.22
     hooks:
       - id: uv-lock

.readthedocs.yml

@@ -4,16 +4,17 @@ build:
   os: ubuntu-24.04
   tools:
     python: "3.10"
-  apt_packages:
-    - graphviz
-  jobs:
-    post_install:
-      - python -m pip install 'uv>=0.2.0'
-      - python -m uv sync --extra=doc
-formats:
-  - htmlzip
-
-sphinx:
-  builder: dirhtml
-  configuration: docs/conf.py
-  fail_on_warning: true
+  commands:
+    - |-
+      export PIXI_HOME=$READTHEDOCS_VIRTUALENV_PATH
+      curl -fsSL https://pixi.sh/install.sh | bash
+      pixi global install graphviz uv
+    - |-
+      export UV_LINK_MODE=copy
+      uv run \
+        --extra doc \
+        --locked \
+        --with tox \
+        tox -e doc
+      mkdir -p $READTHEDOCS_OUTPUT
+      mv docs/_build/html $READTHEDOCS_OUTPUT

README.md

@@ -20,6 +20,7 @@
 [![Spelling checked](https://img.shields.io/badge/cspell-checked-brightgreen.svg)](https://github.com/streetsidesoftware/cspell/tree/master/packages/cspell)
 [![code style: prettier](https://img.shields.io/badge/code_style-prettier-ff69b4.svg?style=flat-square)](https://github.com/prettier/prettier)
 [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
+[![uv](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json)](https://github.com/astral-sh/uv)
 
 TensorWaves is a fitter package that optimizes mathematical models to data samples. The
 models can be any _symbolic_ mathematical expression that is then converted to any

pyproject.toml

@@ -64,17 +64,14 @@ dev = [
     "tensorwaves[jupyter]",
     "tensorwaves[sty]",
     "tensorwaves[test]",
-    "tox >=1.9", # for skip_install, use_develop
+    "tox",
 ]
 doc = [
-    "Sphinx >=3",
-    "black",
-    "ipympl",
     "jupyter",
     "matplotlib",
-    "myst-nb >=0.14", # nb_ configuration prefixes
-    "pandas",
-    "sphinx-api-relink >=0.0.4",
+    "myst-nb",
+    "sphinx",
+    "sphinx-api-relink",
     "sphinx-book-theme",
     "sphinx-codeautolink[ipython]",
     "sphinx-comments",
@@ -83,11 +80,12 @@ doc = [
     "sphinx-thebe",
     "sphinx-togglebutton",
     "sphobjinv",
-    "tensorwaves[all]",
+    "tensorwaves[notebooks]",
 ]
 jax = [
     "jax",
     "jaxlib",
+    "tensorwaves[all]",
 ]
 jupyter = [
     "jupyterlab",
@@ -99,6 +97,11 @@ jupyter = [
     "python-lsp-server[rope]",
     "tensorwaves[doc]",
 ]
+notebooks = [
+    "black",
+    "ipympl",
+    "pandas",
+]
 numba = [
     "numba",
 ]
@@ -138,15 +141,15 @@ test = [
 test-types = [
     "ipython", # test _repr_pretty_
     "pytest",
-    "pytest-mock >=3.3.0",
+    "pytest-mock",
 ]
 tf = [
     "numpy<2",
     "tensorflow !=2.15.0.post1", # https://github.com/ComPWA/tensorwaves/actions/runs/7147814088/job/19467965144?pr=509
     "tensorflow >=2.4", # tensorflow.experimental.numpy
 ]
 types = [
-    "sphinx-api-relink >=0.0.4",
+    "sphinx-api-relink",
     "tensorwaves[jax]",
     "tensorwaves[pwa]",
     "tensorwaves[test-types]",
@@ -481,6 +484,8 @@ commands =
     pytest {posargs}
 description = Run all unit tests
 passenv = *
+setenv =
+    PYTHONHASHSEED = 0
 
 [testenv:bench]
 allowlist_externals =
@@ -525,6 +530,7 @@ commands =
         docs/ docs/_build/html
 description = Build documentation and API through Sphinx
 setenv =
+    {[testenv]setenv}
     PYTHONWARNINGS =
 
 [testenv:docnb]
@@ -544,13 +550,15 @@ setenv =
 [testenv:doclive]
 allowlist_externals =
     sphinx-autobuild
+base = doc
 commands =
     sphinx-autobuild \
         --builder=dirhtml \
         --ignore=docs/_build/ \
         --ignore=docs/api/ \
         --ignore=docs/usage/logs/ \
         --open-browser \
+        --port=0 \
         --re-ignore='.*/__pycache__/.*' \
         --re-ignore='.*/.ipynb_checkpoints/.*' \
         --re-ignore='.*/.virtual_documents/.*' \
@@ -598,7 +606,7 @@ description = Run all notebooks with pytest
 allowlist_externals =
     pre-commit
 commands =
-    pre-commit run {posargs} --all-files
+    pre-commit run --all-files {posargs}
 description = Perform all linting, formatting, and spelling checks
 setenv =
     SKIP = pyright