FIX: define dev dependencies as dependency groups (#35)

* BREAK: convert package dependencies to notebook dependencies
* ENH: define script dependencies inline
  https://docs.astral.sh/uv/guides/scripts/#declaring-script-dependencies
* FIX: remove `pre-commit-uv` from environment
* FIX: remove developer dependencies from extras
* FIX: run envionment with Python 3.12
* MAINT: apply Ruff fixes
* MAINT: update lock files

.binder/postBuild

@@ -3,9 +3,12 @@ set -ex
 curl -LsSf https://astral.sh/uv/install.sh | sh
 source $HOME/.cargo/env
 uv export \
-  --extra jupyter \
+  --group jupyter \
+  --group notebooks \
+  --no-dev \
   > requirements.txt
 uv pip install \
   --requirement requirements.txt \
   --system
+rm requirements.txt
 uv cache clean

.github/workflows/amptools.yml

@@ -79,12 +79,14 @@ jobs:
           make -j$(nproc)
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.10"
-      - run: pip install .
+          python-version: "3.12"
+      - uses: astral-sh/setup-uv@v3
+        with:
+          enable-cache: true
       - name: Run executables
         run: |
           ./print_amplitudes -c zlm.cfg > .print_amplitudes.log
-          python ./makeComparison.py
+          uv run makeComparison.py
           ./draw_zlm
         working-directory: script
       - uses: actions/upload-artifact@v3

.pre-commit-config.yaml

@@ -9,7 +9,7 @@ repos:
       - id: check-useless-excludes
 
   - repo: https://github.com/ComPWA/policy
-    rev: 0.5.0
+    rev: 0.5.5
     hooks:
       - id: colab-toc-visible
       - id: check-dev-files
@@ -49,7 +49,7 @@ repos:
             metadata.vscode
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.7.0
+    rev: v0.7.1
     hooks:
       - id: ruff
         args: [--fix]
@@ -119,6 +119,6 @@ repos:
           - "-y=defaultIndent: '  '"
 
   - repo: https://github.com/astral-sh/uv-pre-commit
-    rev: 0.4.24
+    rev: 0.4.27
     hooks:
       - id: uv-lock

binder/runtime.txt

@@ -1 +1 @@
-python-3.10
+python-3.12

docs/widget.ipynb

@@ -437,7 +437,7 @@
     "    sign = l_str[6]\n",
     "    indices = eval(l_str[9:])\n",
     "    superscript = f\"<sup>({sign})</sup>\"\n",
-    "    subscript = f\"<sub>{\",\".join(f\"{i:+d}\" if i else str(i) for i in indices)}</sub>\"\n",
+    "    subscript = f\"<sub>{','.join(f'{i:+d}' if i else str(i) for i in indices)}</sub>\"\n",
     "    label = f\"[𝑙]{superscript}{subscript}\"\n",
     "    row = w.HBox([w.HTML(label), sliders[f\"{l_str}_mag\"], sliders[f\"{l_str}_phi\"]])\n",
     "    l_sliders[sign].append(row)\n",

pyproject.toml

@@ -3,47 +3,44 @@ build-backend = "setuptools.build_meta"
 requires = ["setuptools"]
 
 [project]
-dependencies = [
-    "ampform",
-    "ipympl",
-    "ipywidgets",
-    "ipywidgets",
-    "matplotlib",
-    "pandas",
-    "sympy",
-    "uproot",
-]
 description = "Investigation of symbolic amplitude models for the GlueX experiment"
 license = {text = "BSD 3-Clause License"}
 name = "gluex-amplitude"
 requires-python = ">=3.12"
 version = "0.0.0"
 
-[project.optional-dependencies]
+[project.readme]
+content-type = "text/markdown"
+file = "README.md"
+
+[dependency-groups]
 dev = [
-    "gluex-amplitude[doc]",
-    "gluex-amplitude[jupyter]",
-    "gluex-amplitude[sty]",
+    "ruff",
+    {include-group = "doc"},
+    {include-group = "jupyter"},
+]
+doc = [
+    "jupyter-book",
+    {include-group = "notebooks"},
 ]
-doc = ["jupyter-book"]
 jupyter = [
     "jupyterlab",
-    "jupyterlab-code-formatter >=3.0.0",
+    "jupyterlab-code-formatter",
     "jupyterlab-git",
     "jupyterlab-lsp",
     "jupyterlab-myst",
     "python-lsp-ruff",
     "python-lsp-server[rope]",
+    {include-group = "notebooks"},
 ]
-sty = [
-    "pre-commit-uv",
-    "ruff",
+notebooks = [
+    "ampform",
+    "ipympl",
+    "ipywidgets",
+    "matplotlib",
+    "sympy",
 ]
 
-[project.readme]
-content-type = "text/markdown"
-file = "README.md"
-
 [tool.ruff]
 extend-include = ["*.ipynb"]
 preview = true

script/makeComparison.py

@@ -1,3 +1,10 @@
+# /// script
+# dependencies = [
+#   "numpy",
+#   "pandas",
+#   "uproot",
+# ]
+# ///
 import re
 
 import numpy as np