build: future proof pre-commit config #281
AliSajidrworkflows.yml
on: push
optimize_ci
3s
Matrix: rworkflows
Annotations
8 errors and 20 warnings
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ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
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ubuntu-latest (auto)
[Workflow Telemetry] Error
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
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ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
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ubuntu-latest (auto)
[Workflow Telemetry] Error
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ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
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macOS-latest (auto)
there is no package called ‘BiocCheck’
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macOS-latest (auto)
Process completed with exit code 1.
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optimize_ci
Request body: {"token":"***","caller":{"name":"graphite-ci-action","version":"0.0.0"},"context":{"kind":"GITHUB_ACTIONS","repository":{"owner":"CogDisResLab","name":"drugfindR"},"sha":"cc96f5b2f85f80a3ff44587ef8eb397e633b7fc7","ref":"refs/heads/devel","head_ref":"","run":{"workflow":"Continuous Integration / R Workflows","job":"optimize_ci","run":11752651390}}}
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optimize_ci
Response status: 400
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optimize_ci
CogDisResLab/drugfindR/undefined
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optimize_ci
Response returned a non-200 status. Skipping Graphite checks.
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windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
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windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:
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windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:
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windows-latest (auto)
The following actions use a deprecated Node.js version and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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ubuntu-latest (auto)
The following actions use a deprecated Node.js version and will be forced to run on node20: runforesight/workflow-telemetry-action@v1, actions/cache@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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macOS-latest (auto)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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macOS-latest (auto)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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macOS-latest (auto)
harfbuzz 10.0.1_1 is already installed and up-to-date.
To reinstall 10.0.1_1, run:
brew reinstall harfbuzz
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macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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macOS-latest (auto)
macOS's Gatekeeper has been disabled for this Cask
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macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
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macOS-latest (auto)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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macOS-latest (auto)
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "macOS-biocversion-devel-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Artifacts
Produced during runtime
| Name | Size | |
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macOS-biocversion-devel-r-auto-results
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7.69 MB |
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