Merge pull request #39 from moonso/v0.8.0

V0.8.0

CHANGELOG.md

@@ -3,14 +3,25 @@ All notable changes to this project will be documented in this file.
 This project adheres to [Semantic Versioning](http://semver.org/).
 
 ## [x.x.x]
-Update BEAN1 documentation reference
-Update GLS and RFC1 hg19 coordinates (zero based off by one)
+
+## [0.8.0]
+Off by one error on PathogenticMin output. All affected have at least been cautioned pre_mutation with proper size.
+Added script to check HGNCId-symbol correspondence against genenames.org.
+Added script to compare two variant_catalogs and warn on disagreeing field items.
+Sync min/max between hg19, hg38 for ATN1, DMPK, FMR1 and TBP.Update BEAN1 documentation reference.
+Update PABPN1 source tag.
+Update GLS and RFC1 hg19 coordinates (zero based off by one).
+Update NIPA1 locus definition updating hg19 to the current ExHu one.
+Update ARX and SOX3 0-based off by one. Usually unproblematic, but gives ugly gap on REViewer alignments.
+Update HTT PathogenicMin and NormalMax so already reduced penetrance are pathogenic - and mark intermediate pre_mutation.
+Update pathologic region annotation on (mostly hg38 liftOver) loci affecting alternate region naming for ATXN7, ATXN8OS, FXN, HTT, CNBP, NOP56.
+Update DAB1 repeat unit (revcomp) and off by one coordinates.
 
 ## [0.7.1]
-Update rank score model
+Update rank score model.
 
 ## [0.7]
-Add a family_id option and print to RankScore elements
+Add a family_id option and print to RankScore elements.
 
 ## [0.6.1]
 Updated hg38/grch38 variant catalog.

stranger/__version__.py

@@ -1 +1 @@
-__version__ = '0.7.1'
+__version__ = '0.8.0'

stranger/resources/variant_catalog_grch38.json

@@ -810,8 +810,8 @@
             "Repeat"
         ],
         "Disease": "Huntington",
-        "NormalMax": 36,
-        "PathologicMin": 40,
+        "NormalMax": 26,
+        "PathologicMin": 36,
         "PathologicRegion": "4:3074876-3074933"
     },
     {