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MIP11 compatibility adjustments and vulnerability fixes

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@northwestwitch northwestwitch released this 13 May 05:56
10ed188

[4.53]

Added

Changed

  • Point Alamut API key docs link to new API version
  • Parse dbSNP id from ID only if it says "rs", else use VEP CSQ fields
  • Removed MarkupSafe from the dependencies

Fixed

  • Reintroduced loading of SVs for demo case 643595
  • Successful parse of FOUND_IN should avoid GATK caller default
  • All vulnerabilities flagged by SonarCloud