MIP11 compatibility adjustments and vulnerability fixes
[4.53]
Added
Changed
- Point Alamut API key docs link to new API version
- Parse dbSNP id from ID only if it says "rs", else use VEP CSQ fields
- Removed MarkupSafe from the dependencies
Fixed
- Reintroduced loading of SVs for demo case 643595
- Successful parse of FOUND_IN should avoid GATK caller default
- All vulnerabilities flagged by SonarCloud