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Mitosign, disabled rerun emails, safe variant matching and misc fixes

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@northwestwitch northwestwitch released this 12 Oct 11:28
e6b26f8

[4.60]

Added

  • Mitochondrial deletion signatures (mitosign) can be uploaded and shown with mtDNA report
  • A Type of analysis column on Causatives and Validated variants pages
  • List of "safe" gene panels available for matching causatives and managed variants in institute settings, to avoid secondary findings
  • svdb_origin as a synonym for FOUND_IN to complement set for variants found by all callers

Changed

  • Hide removed gene panels by default in panels page
  • Removed option for filtering cancer SVs by Tumor and Normal alt AF
  • Hide links to coverage report from case dynamic HPO panel if cancer analysis
  • Remove rerun emails and redirect users to the analysis order portal instead
  • Updated clinical SVs igv.js track (dbVar) and added example of external track from https://trackhubregistry.org/

Fixed

  • If trying to load a badly formatted .tsv file an error message is displayed.
  • Avoid showing case as rerun when first attempt at case upload failed
  • Dynamic autocomplete search not working on phenomodels page
  • Callers added to variant when loading case
  • Now possible to update managed variant from file without deleting it first
  • Missing preselected chromosome when editing a managed variant
  • Preselected variant type and subtype when editing a managed variant
  • Typo in dbVar ClinVar track, hg19