Merge pull request #2632 from Clinical-Genomics/add-gatk-to-sv-callers

Added GATK to SV/ cancer SV list
Clinical-Genomics · May 18, 2021 · 688a45b · 688a45b
2 parents 7bdc395 + 16f594c
commit 688a45b
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 1 deletion.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -18,6 +18,7 @@ About changelog [here](https://keepachangelog.com/en/1.0.0/)
 - Support LoqusDB REST API queries
 - Add a docker-compose-matchmaker under scout/containers/development to test matchmaker locally
 - Script to investigate consequences of symbol search bug
+- Added GATK to list of SV and cancer SV callers
 ### Fixed
 - Make MitoMap link work for hg38 again
 - Export Variants feature crashing when one of the variants has no primary transcripts

diff --git a/scout/constants/__init__.py b/scout/constants/__init__.py
@@ -123,8 +123,12 @@
         {"id": "gatk", "name": "GATK"},
         {"id": "freebayes", "name": "Freebayes"},
     ],
-    "cancer_sv": [{"id": "manta", "name": "Manta"}],
+    "cancer_sv": [
+        {"id": "manta", "name": "Manta"},
+        {"id": "gatk", "name": "GATK"},
+    ],
     "sv": [
+        {"id": "gatk", "name": "GATK"},
         {"id": "cnvnator", "name": "CNVnator"},
         {"id": "delly", "name": "Delly"},
         {"id": "tiddit", "name": "TIDDIT"},