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Release v4.31
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dnil committed Mar 25, 2021
1 parent 80e1e93 commit 3e73498
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5 changes: 3 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -4,9 +4,11 @@ This project adheres to [Semantic Versioning](http://semver.org/).

About changelog [here](https://keepachangelog.com/en/1.0.0/)


## [X.X.X]
### Added

## [4.31]
### Added
- gnomAD annotation field in admin guide
- Export also dynamic panel genes not associated to an HPO term when downloading the HPO panel
- Primary HGNC transcript info in variant export files
Expand All @@ -33,7 +35,6 @@ About changelog [here](https://keepachangelog.com/en/1.0.0/)
- Separating the columns of standard and custom inheritance models in gene panels
- Improved ClinVar instructions for users using non-English Excel


## [4.30.2]
### Added
### Fixed
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2 changes: 1 addition & 1 deletion scout/__version__.py
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@@ -1 +1 @@
__version__ = "4.30.2"
__version__ = "4.31"
4 changes: 3 additions & 1 deletion scout/build/variant/transcript.py
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Expand Up @@ -75,7 +75,9 @@ def build_transcript(transcript, build="37"):
transcript_obj["mane_select_transcript"] = transcript["mane_select_transcript"]

if transcript.get("mane_plus_clinical_transcript"):
transcript_obj["mane_plus_clinical_transcript"] = transcript["mane_plus_clinical_transcript"]
transcript_obj["mane_plus_clinical_transcript"] = transcript[
"mane_plus_clinical_transcript"
]

transcript_obj["is_canonical"] = transcript.get("is_canonical", False)

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4 changes: 3 additions & 1 deletion scout/build/variant/variant.py
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Expand Up @@ -371,7 +371,9 @@ def build_variant(
variant_obj["gnomad_mt_homoplasmic_frequency"] = float(frequencies["gnomad_mt_homoplasmic"])

if frequencies.get("gnomad_mt_heteroplasmic"):
variant_obj["gnomad_mt_heteroplasmic_frequency"] = float(frequencies["gnomad_mt_heteroplasmic"])
variant_obj["gnomad_mt_heteroplasmic_frequency"] = float(
frequencies["gnomad_mt_heteroplasmic"]
)

if frequencies.get("thousand_g_left"):
variant_obj["thousand_genomes_frequency_left"] = float(frequencies["thousand_g_left"])
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