Use setup-micromamba action from mamba-org

Clinical-Genomics · Jun 28, 2024 · d72470a · d72470a
1 parent a431e1d
commit d72470a
Showing 1 changed file with 5 additions and 11 deletions.
diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml
@@ -14,19 +14,13 @@ jobs:
       uses: actions/setup-python@v3
       with:
         python-version: '3.6.15'
-    - name: Install micromamba
-      run: |
-        bash <(curl -L micro.mamba.pm/install.sh)
-        export MAMBA_EXE='/home/runner/.local/bin/micromamba'
-        export MAMBA_ROOT_PREFIX='/home/runner/micromamba'
-    - name: Install dependencies
-      run: |
-        export LANG=en_US.iso885915
-        echo $LANG
-        micromamba create --file environment.yml
+    - name: Create conda/mamba environment using micromamba
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        environment-file: environment.yml
+        cache-downloads: true
     - name: Install microSALT
       run: |
-        micromamba activate microSALT
         mkdir ~/.microSALT && cp configExample.json ~/.microSALT/config.json
         GITHUB_BRANCH=${GITHUB_REF##*/}
         pip install -r requirements.txt -r requirements-dev.txt