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| name: Python Package using Conda | |
| on: [push] | |
| env: | |
| CONDA_PREFIX: /opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/microSALT | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.6 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.6.15' | |
| - name: Create conda/mamba environment using micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| cache-downloads: true | |
| - name: Print out CONDA_PREFIX | |
| run: | | |
| echo "CONDA_PREFIX: ${CONDA_PREFIX}" | |
| - name: List microsalt install dir | |
| run: | | |
| find /opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/microSALT/ | |
| #- name: Set CONDA_PREFIX | |
| # run: | | |
| # export CONDA_PREFIX=/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/microSALT | |
| #- name: Print out CONDA_PREFIX AFTER setting it | |
| # run: | | |
| # echo "CONDA_PREFIX: ${CONDA_PREFIX}" | |
| - name: Install microSALT | |
| run: | | |
| mkdir ~/.microSALT && cp configExample.json ~/.microSALT/config.json | |
| GITHUB_BRANCH=${GITHUB_REF##*/} | |
| pip install -r requirements.txt -r requirements-dev.txt | |
| pip install -U . | |
| ##Inactivate this for now, so as to get tests running first. | |
| #- name: Lint with flake8 | |
| # run: | | |
| # #micromamba install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # #flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # #flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| #- name: Look for installation path of microSALT | |
| # run: | | |
| # find / -iname '*microSALT*' | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov=microSALT tests | |
| - name: Run Coveralls | |
| run: | | |
| coveralls |