Add pixi environment for local testing #22
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name: Python Package using Conda | |
on: [push] | |
jobs: | |
build-linux: | |
runs-on: ubuntu-20.04 | |
strategy: | |
max-parallel: 5 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.6 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: '3.6.15' | |
- name: Create conda/mamba environment using micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: environment.yml | |
cache-downloads: true | |
- name: Install microSALT | |
run: | | |
mkdir ~/.microSALT && cp configExample.json ~/.microSALT/config.json | |
GITHUB_BRANCH=${GITHUB_REF##*/} | |
pip install -r requirements.txt -r requirements-dev.txt | |
pip install -U . | |
##Inactivate this for now, so as to get tests running first. | |
#- name: Lint with flake8 | |
# run: | | |
# #micromamba install flake8 | |
# # stop the build if there are Python syntax errors or undefined names | |
# #flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
# #flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Print out CONDA_PREFIX | |
run: | | |
echo "CONDA_PREFIX: ${CONDA_PREFIX}" | |
- name: Test with pytest | |
run: | | |
export CONDA_PREFIX=$(pwd)/tests; | |
pytest --cov=microSALT tests | |
- name: Run Coveralls | |
run: | | |
coveralls |