Init micromamba shell after installation #8
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| name: Python Package using Conda | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| max-parallel: 5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.6 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.6.15' | |
| - name: Install micromamba | |
| run: | | |
| bash <(curl -L micro.mamba.pm/install.sh) | |
| eval "$(micromamba shell hook --shell bash)" | |
| - name: Install dependencies | |
| run: | | |
| export LANG=en_US.iso885915 | |
| echo $LANG | |
| micromamba create --file environment.yml | |
| - name: Install microSALT | |
| run: | | |
| micromamba activate microSALT | |
| mkdir ~/.microSALT && cp configExample.json ~/.microSALT/config.json | |
| GITHUB_BRANCH=${GITHUB_REF##*/} | |
| branch=$GITHUB_BRANCH; yes | bash <(cat install.sh) $branch | |
| - name: Lint with flake8 | |
| run: | | |
| micromamba install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| micromamba install pytest | |
| pytest --cov=microSALT tests/ | |
| - name: Run Coveralls | |
| run: | | |
| coveralls |