Watchmaker EPP updates

[Karl-Svard]

Added

• New flag to specify max volume in the calculate volume-buffer EPP

Changed

• Renamed the TWIST aliquot amount EPP to just "aliquot-amount"
• Also generalized it by moving all hard-coded UDF names and constants to click options instead

Steps to consider while deploying

• Configuration changes:
• Documentation updates:
• Inform users by email:

Review:

• Code approved by
• Tests executed on stage by: (Document the test done with screen shots and description.)
• "Merge and deploy" approved by

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[Karl-Svard]

Aliquot amount EPP worked on stage for TWIST workflow.

lims -c ../config/genologics-stage.yaml epps -l ../log.log -p 24-553604 udf calculate aliquot-amount -v 'Volume (ul)' --total-volume-udf 'Total Volume (ul)' --concentration-udf 'Concentration' --amount-ng-udf 'Amount needed (ng)' --max-amount 250

https://cg-lims-stage.sys.scilifelab.se/clarity/work-details/553604

[Karl-Svard]

Updates to the calculate volume-buffer tested on stage:

(cg_lims) karl.svard@karlsmbp cg_lims % lims -c ../config/genologics-stage.yaml epps -l ../log.log -p 24-553545 udf calculate volume-buffer -v 'Sample Volume (ul)' -b 'EB Volume (ul)' --total-volume-udf 'Total Volume (uL)' -svl 50 --max-volume 100
Total volume higher than 100 ul for some samples!
(cg_lims) karl.svard@karlsmbp cg_lims % lims -c ../config/genologics-stage.yaml epps -l ../log.log -p 24-553545 udf calculate volume-buffer -v 'Sample Volume (ul)' -b 'EB Volume (ul)' --total-volume-udf 'Total Volume (uL)' -svl 50 --max-volume 110
Volumes have been calculated.
(cg_lims) karl.svard@karlsmbp cg_lims % lims -c ../config/genologics-stage.yaml epps -l ../log.log -p 24-553545 udf calculate volume-buffer -v 'Sample Volume (ul)' -b 'EB Volume (ul)' --total-volume-udf 'Total Volume (uL)' -svl 50 --max-volume 111
Volumes have been calculated.
(cg_lims) karl.svard@karlsmbp cg_lims % lims -c ../config/genologics-stage.yaml epps -l ../log.log -p 24-553545 udf calculate volume-buffer -v 'Sample Volume (ul)' -b 'EB Volume (ul)' --total-volume-udf 'Total Volume (uL)' -svl 50 --max-volume 109
Total volume higher than 109 ul for some samples!
(cg_lims) karl.svard@karlsmbp cg_lims % lims -c ../config/genologics-stage.yaml epps -l ../log.log -p 24-553545 udf calculate volume-buffer -v 'Sample Volume (ul)' -b 'EB Volume (ul)' --total-volume-udf 'Total Volume (uL)' -svl 50 --max-volume 50 
Total volume higher than 50 ul for some samples!

Step used was https://cg-lims-stage.sys.scilifelab.se/clarity/work-complete/553545 where the highest volume is 110ul.

[AbiDalby]

Great!

[idalindegaard]

That looks great👏