Open status for only existing samples ticket #4139
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Add parent models and Tomte models for the new validation flow.
Split logic into modules based on workflow
### Fixed - Some typing and a blueprint method for converting pydantic errors to our own custom errors.
### Added - Validation that the provided applications exist in the database
### Added - Check that the application provided is compatible with the chosen workflow.
### Added - Applications are validated not to be archived.
### Fixed - Standardised rule naming.
### Added - Added validation making sure that the gene panels exist in status db
### Added - Adds validation ensuring gene panels are not specified more than once.
### Added - Buffer validation for orders attempting to skip reception control
### Added - Validation ensuring that the subject id is not the same as the case name.
### Added - Validation ensuring that the sample name and subject id can not be the same.
### Added - Validation that the concentration is provided for all samples when skip reception control is attempted.
### Added - Container names are required when using well plates.
### Added - Validation that well position is filled in for samples in a well plate.
### Fixed - Existing samples are enforced to belong to the same collaboration as the customer placing the order.
enhance order submission integration tests
### Fixed - No hard coding of delivery type or workflow in the storing services
### Fixed - The pre commit matches master
### Fixed - MutantSample and MicrosaltSample dumps the verified_organism value
### Fixed - The repeated case name rule only considers new cases
### Fixed - The volume interval is not validated for Pacbio orders since the interval is not what the customers need either way
### Fixed - Panels are optional for existing cases.
add test for validation pool
add tests for mutant validator
…update get_ticket_status logic
… to return correct variable
Merge branch 'existing-data-tag' into open-status-for-only-existing-samples-ticket
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Wrong base branch chosen, closing |
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Description
Close #4006
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How to prepare for test
uspaxaHow to test
Expected test outcome
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